thegenemyers / PHASE-MERSView external linksLinks
Utilities to detect and profile `het-kmers`
☆12Aug 5, 2024Updated last year
Alternatives and similar repositories for PHASE-MERS
Users that are interested in PHASE-MERS are comparing it to the libraries listed below
Sorting:
- ☆11Dec 9, 2022Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆15Aug 14, 2024Updated last year
- ☆10Nov 3, 2025Updated 3 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 8 months ago
- FastK based version of Merqury☆30Jan 19, 2026Updated 3 weeks ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated 8 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆140Jan 19, 2026Updated 3 weeks ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆35Oct 27, 2025Updated 3 months ago
- ☆17Jan 5, 2021Updated 5 years ago
- Kmer Analysis of Pileups for Genotyping☆35Jan 30, 2026Updated 2 weeks ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Yet another k-mer analyzer☆158Dec 30, 2025Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated 2 weeks ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- ☆20Nov 30, 2023Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆36Mar 29, 2020Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Lossless VCF compression☆21Mar 4, 2022Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 7 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Apr 26, 2023Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- efficient alignment of strings to partially ordered string graphs☆33Jan 31, 2022Updated 4 years ago