thegenemyers / PHASE-MERS
Utilities to detect and profile `het-kmers`
☆11Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for PHASE-MERS
- Align subreads to ccs reads☆13Updated last year
- Extracts subgraphs or components from a graph in GFA format☆22Updated 5 months ago
- ☆11Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- convert variation graph alignments to coverage maps over nodes☆21Updated this week
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆16Updated 2 years ago
- ☆12Updated 3 years ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 2 years ago
- ☆16Updated 3 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 10 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Extracting paths from assembly graphs☆22Updated 6 months ago
- ☆32Updated last year
- Indel-aware consensus from aligned BAMs☆20Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- ☆10Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆20Updated 7 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Scaffolding with Ultralong Reads☆14Updated 3 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated 9 months ago
- ☆10Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆19Updated 11 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Variant call adjudication☆16Updated 4 months ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago