SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.
☆94May 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for synvisio
Users that are interested in synvisio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆289Oct 4, 2025Updated 8 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 6 months ago
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- Extensive de-novo TE Annotator☆450May 12, 2026Updated last month
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 2 months ago
- An R package to infer and analyze synteny networks from protein sequences☆41Jul 23, 2025Updated 10 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆918May 2, 2026Updated last month
- defusion☆14Aug 24, 2021Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Updated this week
- Neural network classification of TE☆100Apr 3, 2026Updated 2 months ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆463Apr 12, 2026Updated 2 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated 11 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Dec 7, 2022Updated 3 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆165Nov 24, 2025Updated 6 months ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 4 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- STAG: Species Tree from All Genes☆36Dec 10, 2018Updated 7 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated 2 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Synteny and Rearrangement Identifier☆473May 20, 2026Updated 3 weeks ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Workflow for Building Microsynteny Networks☆61Jul 30, 2022Updated 3 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 10 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- ☆189May 22, 2025Updated last year
- ☆245Jan 24, 2025Updated last year
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 5 months ago
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 7 years ago