SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.
☆94Jul 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for synvisio
Users that are interested in synvisio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆296Oct 4, 2025Updated 10 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 8 months ago
- k-mer based assembly evaluation☆352Jul 6, 2026Updated last month
- Extensive de-novo TE Annotator☆468Jul 16, 2026Updated last month
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 4 months ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 8, 2026Updated last week
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆927Updated this week
- defusion☆14Aug 24, 2021Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆43Jul 23, 2025Updated last year
- Neural network classification of TE☆101Apr 3, 2026Updated 4 months ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆468Jun 17, 2026Updated 2 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 6 months ago
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated last year
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Tool to plot synteny and structural rearrangements between genomes☆353Jul 27, 2026Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated last month
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- TSEBRA: Transcript Selector for BRAKER☆51Apr 7, 2026Updated 4 months ago
- Workflow for Building Microsynteny Networks☆62Jul 30, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 7 months ago
- ☆190May 22, 2025Updated last year
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated last year
- ☆258Jan 24, 2025Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆174Nov 24, 2025Updated 8 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year