Alternatives and similar repositories for synvisio:

Users that are interested in synvisio are comparing it to the libraries listed below

• rhysf / Synima
  Synteny Imager
  ☆60Updated 6 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 3 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• chenlianfu / geta
  ☆73Updated 7 months ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆61Updated 4 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆63Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• daewoooo / SVbyEye
  ☆76Updated this week
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆112Updated 7 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆100Updated last week
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆107Updated 3 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆88Updated 3 months ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated last month
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆97Updated 10 months ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆95Updated last week
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆98Updated last month
• xiaochuanle / MECAT2
  ☆70Updated 4 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆73Updated this week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆78Updated 3 weeks ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆29Updated 3 years ago
• MetazoaPhylogenomicsLab / FANTASIA
  ☆26Updated last week
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆65Updated 6 years ago
• kjenike / panagram
  ☆61Updated last week
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆96Updated 4 years ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆98Updated last week
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago