Alternatives and similar repositories for synvisio

Users that are interested in synvisio are comparing it to the libraries listed below

• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆108Updated last year
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆109Updated last week
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆92Updated 2 months ago
• rhysf / Synima
  Synteny Imager
  ☆63Updated 2 weeks ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆98Updated 6 months ago
• arzwa / wgd
  Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…
  ☆85Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆81Updated 4 years ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆51Updated 5 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆69Updated 2 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆116Updated 8 months ago
• liangclab / HERA
  ☆77Updated 5 years ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆73Updated 10 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆55Updated 3 years ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆121Updated 2 years ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆75Updated this week
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆121Updated 2 weeks ago
• chenlianfu / geta
  ☆81Updated last year
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆75Updated last week
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆49Updated last year
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆105Updated 2 weeks ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆104Updated 3 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆70Updated last week
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆120Updated last year
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆79Updated last year
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆58Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆99Updated last month