slimsuite / chromsynLinks
Chromosome-level synteny plotting using orthologous regions
☆29Updated 11 months ago
Alternatives and similar repositories for chromsyn
Users that are interested in chromsyn are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆31Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 weeks ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- Multi-genome synteny block visualization tool☆44Updated 7 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆32Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Genome Annotation Pipeline☆36Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆29Updated last year
- Yet another Hi-C scaffolding tool☆22Updated 10 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- read and analyse RepeatMasker output☆25Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆42Updated last year
- ☆32Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated last year
- ☆30Updated 8 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- ☆24Updated this week
- Compute N50/NG50 and auN/auNG☆32Updated last year