slimsuite / chromsyn
Chromosome-level synteny plotting using orthologous regions
☆29Updated 7 months ago
Alternatives and similar repositories for chromsyn:
Users that are interested in chromsyn are comparing it to the libraries listed below
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 10 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Multi-genome synteny block visualization tool☆33Updated 2 months ago
- ☆27Updated last year
- ☆40Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Genome alignment and synteny plots☆30Updated last year
- Genome Annotation Pipeline☆35Updated 8 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆19Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆32Updated 5 months ago
- ☆29Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆29Updated 3 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆32Updated 4 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- ☆40Updated 2 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆16Updated 4 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆26Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆39Updated 3 months ago