Alternatives and similar repositories for chromsyn

Users that are interested in chromsyn are comparing it to the libraries listed below

• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 3 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆42Updated 5 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆41Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• i10labtitech / GINGER
  ☆28Updated last year
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated 10 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆21Updated 8 months ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 5 years ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆35Updated 2 years ago
• baozg / phased-assembly-check
  ☆30Updated 6 months ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated last year
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆27Updated 6 months ago
• hillerlab / ForwardGenomics
  Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
  ☆23Updated 2 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated last year
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated 2 years ago
• guillemylla / Crickets_Genome_Annotation
  Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.
  ☆13Updated 3 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• Dee-chen / Tree2gd
  ☆41Updated 2 years ago
• mrvollger / NucFreq
  ☆37Updated last year
• pnatsi / OGFilter
  A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria
  ☆17Updated 4 years ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 3 years ago