slimsuite / chromsynLinks
Chromosome-level synteny plotting using orthologous regions
☆31Updated last year
Alternatives and similar repositories for chromsyn
Users that are interested in chromsyn are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆33Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 2 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- Multi-genome synteny block visualization tool☆49Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆33Updated 4 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Genome Annotation Pipeline☆42Updated last year
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- ☆31Updated last week
- ☆29Updated last year
- ☆44Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆29Updated 3 weeks ago
- ☆31Updated 11 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 2 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- SV genotyper for long reads with a variation graph☆14Updated 3 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago