slimsuite / chromsyn

Related projects ⓘ

Alternatives and complementary repositories for chromsyn

• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated 11 months ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆13Updated 5 months ago
• i10labtitech / GINGER
  ☆24Updated 10 months ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆33Updated last year
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆33Updated 2 years ago
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆26Updated 6 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆35Updated last year
• yanyew / SynGAP
  ☆29Updated last week
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆19Updated 4 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆32Updated 3 months ago
• Dee-chen / Tree2gd
  ☆39Updated 2 years ago
• HuffordLab / GenomeQC
  ☆32Updated 3 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆36Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆33Updated 2 months ago
• ShiuLab / PseudogenePipeline
  ☆36Updated last year
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆29Updated 4 years ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆12Updated 9 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆25Updated 2 months ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆44Updated 5 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 3 months ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• ohdongha / OrthNet
  CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…
  ☆9Updated 2 years ago
• guillemylla / Crickets_Genome_Annotation
  Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.
  ☆13Updated 2 years ago
• PlantDr430 / FunFinder_Pangenome
  Data analysis of Funannotate and Orthofinder outputs to Pangenome results
  ☆17Updated 4 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆25Updated 3 weeks ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆28Updated last year