slimsuite / chromsynLinks
Chromosome-level synteny plotting using orthologous regions
☆29Updated last year
Alternatives and similar repositories for chromsyn
Users that are interested in chromsyn are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆32Updated 2 years ago
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 3 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆29Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆25Updated 3 weeks ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Genome Annotation Pipeline☆36Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆33Updated 4 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 2 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated 5 months ago