josuebarrera / GenEraLinks
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
☆52Updated 7 months ago
Alternatives and similar repositories for GenEra
Users that are interested in GenEra are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 4 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆33Updated 3 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- A program for divvying or partially filtering multiple sequence alignments☆26Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- perSVade: personalized Structural Variation detection☆40Updated this week
- FastOMA is a scalable software package to infer orthology relationship.☆77Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 6 months ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Tiberius is a deep learning gene finder.☆67Updated last week
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- ☆32Updated last year
- A program for detection of tRNA genes☆63Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆48Updated 2 weeks ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated last month
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 5 months ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated last month
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Complete assemblies of non-human primate genomes☆50Updated last month
- ☆63Updated last week
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- ☆26Updated 4 years ago
- HyPhy standalone analyses☆45Updated 3 months ago