josuebarrera / GenEraLinks
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
☆52Updated 10 months ago
Alternatives and similar repositories for GenEra
Users that are interested in GenEra are comparing it to the libraries listed below
Sorting:
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 weeks ago
- An R package to infer and analyze synteny networks from protein sequences☆32Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 10 months ago
- ☆33Updated last year
- A program for detection of tRNA genes☆69Updated 2 years ago
- HyPhy standalone analyses☆46Updated last month
- orthology assignment using phylogenetic and network analyses☆47Updated 7 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- A comparative genomics workflow using Nextflow, conda, Julia and R☆45Updated last year
- perSVade: personalized Structural Variation detection☆40Updated last month
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆13Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆40Updated 2 weeks ago
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- Tiberius is a deep learning gene finder.☆77Updated this week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆44Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated 3 weeks ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated 2 weeks ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆35Updated 2 months ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆24Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome