Alternatives and similar repositories for GenEra

Users that are interested in GenEra are comparing it to the libraries listed below

• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆42Updated 2 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆76Updated this week
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆61Updated this week
• slt666666 / NLRtracker
  NLR annotation tool
  ☆27Updated last year
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated 2 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 3 months ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆60Updated 2 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆41Updated last week
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 6 months ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆32Updated last month
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 3 months ago
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆40Updated last week
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆56Updated 2 years ago
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆21Updated 2 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated 2 years ago
• PalMuc / TransPi
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
  ☆27Updated 3 years ago
• formbio / FLAG
  ☆32Updated 10 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆34Updated last week
• kjenike / panagram
  ☆62Updated last week
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆45Updated this week
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆32Updated 2 months ago
• veg / hyphy-analyses
  HyPhy standalone analyses
  ☆43Updated last month
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆66Updated 5 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated 3 weeks ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆77Updated last month
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆41Updated 2 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆20Updated 3 weeks ago