josuebarrera / GenEraLinks
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
☆52Updated 6 months ago
Alternatives and similar repositories for GenEra
Users that are interested in GenEra are comparing it to the libraries listed below
Sorting:
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆76Updated last week
- NLR annotation tool☆28Updated last year
- Computational Analysis of Gene Expression Evolution☆42Updated last week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated 2 months ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated 3 weeks ago
- A program for detection of tRNA genes☆61Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆22Updated 3 years ago
- Tiberius is a deep learning gene finder.☆65Updated last week
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 2 months ago
- ☆35Updated 2 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆27Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- Error correction of ONT transcript reads☆58Updated last year
- ☆27Updated 5 years ago
- Best practices and workflow for genome annotation☆77Updated 2 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated 3 weeks ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated this week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆104Updated 4 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆27Updated last month
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆55Updated last week
- Error correction for Illumina RNA-seq reads☆67Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago