BrendelGroup / AEGeAnLinks
Integrated toolkit for analysis and evaluation of annotated genomes
☆25Updated 5 months ago
Alternatives and similar repositories for AEGeAn
Users that are interested in AEGeAn are comparing it to the libraries listed below
Sorting:
- Population-wide Deletion Calling☆35Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- Benchmark structural variant calls against a reference set☆18Updated last week
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Find Unique genomic Regions☆32Updated this week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- ☆29Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago