BrendelGroup / AEGeAnLinks
Integrated toolkit for analysis and evaluation of annotated genomes
☆25Updated 3 weeks ago
Alternatives and similar repositories for AEGeAn
Users that are interested in AEGeAn are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- ☆15Updated 7 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆32Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- ☆28Updated 4 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 8 months ago
- ☆20Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- transposable element typing pipeline☆18Updated last year