An R package to detect, classify, and visualize genome rearrangements
☆15Aug 4, 2020Updated 5 years ago
Alternatives and similar repositories for rearrvisr
Users that are interested in rearrvisr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 4 years ago
- ☆12Dec 12, 2014Updated 11 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 6 months ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Oct 12, 2025Updated 5 months ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆15Jan 3, 2026Updated 2 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Nov 24, 2025Updated 4 months ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆113Mar 19, 2026Updated last week
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- ☆25Dec 3, 2025Updated 3 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated last month
- ☆13Nov 15, 2017Updated 8 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated last month
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- R functions to dead-reckon reckon animal movement from raw motion sensor data☆10Aug 1, 2023Updated 2 years ago
- ☆186May 22, 2025Updated 10 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Updated this week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year