dorolin / rearrvisrLinks
An R package to detect, classify, and visualize genome rearrangements
☆14Updated 5 years ago
Alternatives and similar repositories for rearrvisr
Users that are interested in rearrvisr are comparing it to the libraries listed below
Sorting:
- New version of mpMap☆12Updated 5 years ago
- R Package for performing Qst-Fst analyses☆21Updated 7 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- ☆11Updated 4 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Updated 2 years ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated 2 months ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆11Updated last year
- Tao Yan's Plot Toolkit☆12Updated 6 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆24Updated 5 months ago
- SNP genotyping in polyploids☆17Updated 5 years ago
- ☆19Updated last year
- ☆12Updated last month
- Teaching modules for Human Genome Variation Lab.☆20Updated 4 months ago
- ☆20Updated last year
- ☆18Updated last week
- ☆18Updated 9 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 4 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆17Updated last week
- de novo targeted gene assembly☆23Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Updated last month
- Suite of tools for pangenomics built using vg☆24Updated 2 months ago
- ☆15Updated 7 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Updated 4 years ago
- Simulate mutations in genomes☆15Updated 5 years ago