Alternatives and similar repositories for orphan-prediction

Users that are interested in orphan-prediction are comparing it to the libraries listed below

• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆40Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆21Updated 9 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• farhangus / Sniffles2_plot
  ☆31Updated 11 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆27Updated this week
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 weeks ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• johnssproul / RepeatProfiler
  ☆26Updated 5 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆46Updated 2 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated 11 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated 2 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆29Updated 3 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆42Updated 10 months ago
• hillerlab / GeneLossPipe
  ☆24Updated 2 years ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆42Updated 6 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• simon19891216 / CentIER
  ☆35Updated 2 weeks ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 2 months ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 3 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆41Updated last year
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago