Alternatives and similar repositories for orphan-prediction

Users that are interested in orphan-prediction are comparing it to the libraries listed below

• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆28Updated 2 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆44Updated last year
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆25Updated 3 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆49Updated 5 months ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆24Updated 2 years ago
• baozg / phased-assembly-check
  ☆31Updated 10 months ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆18Updated 6 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆27Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆26Updated 9 months ago
• hillerlab / GeneLossPipe
  ☆24Updated 2 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• Nextomics / nextsv
  ☆36Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• baoxingsong / GEAN
  This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
  ☆45Updated 2 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆39Updated last year