ihh / abrowse

Related projects ⓘ

Alternatives and complementary repositories for abrowse

• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated last year
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆10Updated 4 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated 10 months ago
• gamcil / clustermap.js
  ☆30Updated 3 years ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆15Updated 7 months ago
• orangeSi / bam2msa
  convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
  ☆11Updated 6 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆30Updated 5 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated this week
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆16Updated 3 weeks ago
• PacificBiosciences / minorseq
  Minor Variant Calling and Phasing Tools
  ☆15Updated 2 years ago
• ImperialCardioGenetics / uORFs
  ☆18Updated 4 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆12Updated 2 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 5 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆21Updated last year
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆17Updated 4 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 5 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 2 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆31Updated 3 months ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆15Updated 2 years ago
• nf-core / vipr
  Assembly and intrahost / low-frequency variant calling for viral samples
  ☆14Updated 4 years ago
• ncbi-gpipe / pgap
  (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
  ☆15Updated 6 years ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated last year
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆18Updated 6 months ago
• slncky / slncky
  slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA or…
  ☆11Updated 3 years ago
• nickloman / poredb
  ☆19Updated 7 years ago
• jorgenunezsiri / accusyn
  AccuSyn: An Accurate Web-based Genome Synteny Browser
  ☆16Updated 2 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆21Updated 7 months ago
• BU-ISCIII / SARS-Cov2_analysis
  Documentation for analyzing SARS-Cov2 samples.
  ☆11Updated 4 years ago
• zacherydickson / HUBDesign
  Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targets
  ☆17Updated last year