Alternatives and similar repositories for abrowse

Users that are interested in abrowse are comparing it to the libraries listed below

• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• zacherydickson / HUBDesign
  Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targets
  ☆17Updated 2 years ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆12Updated 3 months ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆26Updated last year
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• orangeSi / bam2msa
  convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
  ☆13Updated last year
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆20Updated 8 months ago
• nch-cloud / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆26Updated 2 months ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated 2 years ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆20Updated 5 years ago
• GMOD / jbrowse-registry
  JBrowse 1.x Plugin Registry
  ☆14Updated 2 years ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated last year
• PacificBiosciences / minorseq
  Minor Variant Calling and Phasing Tools
  ☆15Updated 3 years ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• FischbachLab / ninjaMap
  Compute strain abundance in a defined microbial community
  ☆10Updated 2 years ago
• lh3 / nasw
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Updated last year
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆27Updated 2 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 5 months ago
• veidenberg / wasabi
  Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org
  ☆17Updated 4 years ago
• gregorykucherov / mreps
  mreps: software for tandem repeat identification in DNA
  ☆15Updated 5 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated 2 weeks ago
• s-andrews / redotable
  A dotplot application for DNA/RNA sequence
  ☆11Updated 2 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• gengit / FRAMA
  FRAMA: From RNA-seq data to annotated mRNA assemblies
  ☆12Updated 7 years ago
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated 7 years ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 2 weeks ago