ihh / abrowse
Multiple sequence alignment browser
☆11Updated 2 years ago
Alternatives and similar repositories for abrowse:
Users that are interested in abrowse are comparing it to the libraries listed below
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- ☆15Updated last year
- ☆31Updated 3 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆16Updated last month
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆11Updated 10 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆16Updated 7 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Python bindings for the TaxonKit library☆36Updated last week
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated 10 months ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆20Updated 11 months ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- JBrowse plugin for methylation related things☆15Updated 6 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated 2 weeks ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targets☆17Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆30Updated 3 months ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 weeks ago