Gaius-Augustus / TSEBRALinks
TSEBRA: Transcript Selector for BRAKER
☆48Updated 11 months ago
Alternatives and similar repositories for TSEBRA
Users that are interested in TSEBRA are comparing it to the libraries listed below
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- ☆44Updated 8 years ago
- A tool for evaluating long-read de novo assembly results☆48Updated last year
- A organelle de novo genome assembly toolkit☆70Updated 8 months ago
- ☆81Updated 2 weeks ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Call select base modifications in PacBio HiFi reads☆14Updated 9 months ago
- A program for assessing the T2T genome continuity☆88Updated 3 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆70Updated last month
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Multi-genome synteny block visualization tool☆47Updated last week
- ☆66Updated last month
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆46Updated 3 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆75Updated last month
- ☆33Updated 4 years ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated 2 weeks ago
- RepeatIdentifier☆70Updated 7 months ago
- PacBio BAM toolkit☆46Updated 8 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- k-mer learning materials☆80Updated 8 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆39Updated this week
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆29Updated 5 months ago
- TGS scaffolding☆47Updated 3 years ago
- Synteny Imager☆64Updated 3 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago