Alternatives and similar repositories for TSEBRA:

Users that are interested in TSEBRA are comparing it to the libraries listed below

• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆51Updated last month
• daewoooo / SVbyEye
  ☆74Updated 3 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 4 months ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• DessimozLab / OMArk
  ☆66Updated last month
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆40Updated last week
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆58Updated 3 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆36Updated this week
• kjenike / panagram
  ☆61Updated last week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆45Updated 11 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆56Updated this week
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆34Updated 4 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆111Updated 6 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆54Updated 2 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆42Updated 4 months ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆24Updated 4 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 8 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆36Updated 6 years ago