almeidasilvaf / syntenetLinks
An R package to infer and analyze synteny networks from protein sequences
☆30Updated 5 months ago
Alternatives and similar repositories for syntenet
Users that are interested in syntenet are comparing it to the libraries listed below
Sorting:
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Multi-genome synteny block visualization tool☆38Updated 4 months ago
- Consensus genome annotation using OMA☆24Updated last month
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- ☆26Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated this week
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 8 months ago
- read and analyse RepeatMasker output☆24Updated 2 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 10 months ago
- Genome-Genome circle synteny☆25Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- ☆15Updated 3 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- ☆27Updated 2 years ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- ContScout sequence contamination filter tool☆20Updated 2 weeks ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year