almeidasilvaf / syntenetLinks
An R package to infer and analyze synteny networks from protein sequences
☆30Updated last month
Alternatives and similar repositories for syntenet
Users that are interested in syntenet are comparing it to the libraries listed below
Sorting:
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 7 months ago
- ☆26Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- Multi-genome synteny block visualization tool☆44Updated 7 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated 10 months ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Automatic evaluation of HGTs☆30Updated 7 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- ☆32Updated last year
- Genome-Genome circle synteny☆25Updated last year
- Add multiple thread function for genome comparison☆16Updated 3 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago