almeidasilvaf / syntenetLinks
An R package to infer and analyze synteny networks from protein sequences
☆30Updated 6 months ago
Alternatives and similar repositories for syntenet
Users that are interested in syntenet are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 4 months ago
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ☆25Updated 10 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Consensus genome annotation using OMA☆24Updated this week
- ContScout sequence contamination filter tool☆20Updated last month
- ☆26Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 3 months ago
- ☆28Updated 2 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 11 months ago
- convert a blast output to a bed file☆12Updated 10 years ago
- ☆20Updated last year
- Genome-Genome circle synteny☆25Updated last year
- Genome alignment and synteny plots☆30Updated 2 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆32Updated 2 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆32Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆21Updated last week
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago