Convergent substitution detection tool based on the PCOC model
☆31Dec 2, 2021Updated 4 years ago
Alternatives and similar repositories for pcoc
Users that are interested in pcoc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analyzing combinations of codon substitution histories☆47Apr 7, 2026Updated last month
- ☆25Nov 29, 2022Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆35May 11, 2026Updated last week
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 5 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆66Apr 17, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated last month
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆46Apr 17, 2026Updated last month
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- Newick tree processing☆13Mar 25, 2026Updated 2 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 9 months ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Code repository for the Global Ant Genomics Alliance☆17Jun 16, 2025Updated 11 months ago
- ☆17Oct 21, 2024Updated last year
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A comprehensive pipeline for RNAseq data analysis☆22Aug 31, 2024Updated last year
- ☆20Jun 15, 2024Updated last year
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 2 months ago
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Aug 5, 2022Updated 3 years ago
- An R framework for phylostratigraphy☆36Aug 12, 2025Updated 9 months ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆94Updated this week
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year