CarineRey / pcocLinks
Convergent substitution detection tool based on the PCOC model
☆31Updated 4 years ago
Alternatives and similar repositories for pcoc
Users that are interested in pcoc are comparing it to the libraries listed below
Sorting:
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- ☆33Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 10 months ago
- Genome Annotation Pipeline☆42Updated last year
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- ☆29Updated last week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- ☆45Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Multi-genome synteny block visualization tool☆50Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 3 weeks ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 3 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- Plant genome assembly and annotation pipeline using snakemake☆50Updated 7 months ago
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆41Updated 3 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆35Updated last month
- Automatic evaluation of HGTs☆30Updated 10 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆48Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆44Updated last year
- A tool for evaluate long-read de novo assembly results☆48Updated last year