CarineRey / pcocLinks
Convergent substitution detection tool based on the PCOC model
☆31Updated 3 years ago
Alternatives and similar repositories for pcoc
Users that are interested in pcoc are comparing it to the libraries listed below
Sorting:
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆32Updated 8 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆32Updated 4 years ago
- Multi-genome synteny block visualization tool☆44Updated 7 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Genome Annotation Pipeline☆36Updated last year
- ☆44Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- ☆29Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated 2 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last week
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Automated pipeline for running CoalHMM☆13Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated 5 months ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 weeks ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- ☆30Updated 8 months ago