☆190May 22, 2025Updated last year
Alternatives and similar repositories for Comparative-Annotation-Toolkit
Users that are interested in Comparative-Annotation-Toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official home of genome aligner based upon notion of Cactus graphs☆703Updated this week
- Hierarchical Alignment Format☆187Updated this week
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 weeks ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 9 months ago
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 4 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆114Jan 30, 2026Updated 7 months ago
- Convert HAL to VG☆24Updated this week
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated last year
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Tiberius is a deep learning gene finder.☆131Aug 17, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated last month
- ☆27Dec 3, 2025Updated 8 months ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆202Aug 17, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆183Aug 11, 2026Updated 2 weeks ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated last year
- ☆261Jan 24, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆250Aug 21, 2026Updated last week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- source code for EVM☆128Nov 29, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆102Apr 22, 2024Updated 2 years ago
- Synteny Mapping and Analysis Program☆30Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆929Aug 12, 2026Updated 2 weeks ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆299May 28, 2026Updated 3 months ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆220Jan 17, 2024Updated 2 years ago