medvedevgroup / SibeliaZLinks
A fast whole-genome aligner based on de Bruijn graphs
☆156Updated 5 months ago
Alternatives and similar repositories for SibeliaZ
Users that are interested in SibeliaZ are comparing it to the libraries listed below
Sorting:
- Long-read mock community experiments☆104Updated 4 years ago
- ☆81Updated 5 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Foreign Contamination Screening caller scripts and documentation☆153Updated 9 months ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆185Updated last month
- Reference-free profiling of polyploid genomes☆137Updated 2 months ago
- Interactive quality assessment of genome assemblies☆116Updated 2 weeks ago
- Nanopore data assembler☆162Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 7 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆120Updated 6 months ago
- ☆144Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- Constructing a pangenome gene graph☆201Updated 4 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 2 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆152Updated last week
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- ☆228Updated 11 months ago
- A list of software for pangenomics☆165Updated 2 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆211Updated 3 months ago
- Yet another k-mer analyzer☆153Updated this week
- Aligns short reads using dynamic seed size with strobemers☆186Updated last week
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- Structural Variant Identification Method using Genome Assemblies☆129Updated 3 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Research release basecalling models and configurations☆117Updated 7 months ago