A fast whole-genome aligner based on de Bruijn graphs
☆162Jul 6, 2025Updated last year
Alternatives and similar repositories for SibeliaZ
Users that are interested in SibeliaZ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 5 years ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated 3 months ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last month
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆254Sep 29, 2026Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆109Jan 17, 2026Updated 9 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆716Updated this week
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- the pangenome graph builder☆522Jul 24, 2026Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆359Jul 27, 2026Updated 3 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆255Dec 16, 2025Updated 10 months ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 3 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Mumemto: multi-MUM and MEM finding across pangenomes☆139Sep 21, 2026Updated last month
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- ☆31Mar 27, 2024Updated 2 years ago
- Foreign Contamination Screening caller scripts and documentation☆179Mar 18, 2025Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆578Oct 1, 2026Updated 3 weeks ago
- Visualize whole genome alignments as linear maps☆74Mar 27, 2026Updated 7 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated last month
- ☆124Sep 29, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- haplotypic duplication identification tool☆298Oct 30, 2025Updated 11 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Jul 30, 2026Updated 3 months ago
- ☆291Dec 29, 2025Updated 10 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago