medvedevgroup / SibeliaZLinks
A fast whole-genome aligner based on de Bruijn graphs
☆150Updated 3 months ago
Alternatives and similar repositories for SibeliaZ
Users that are interested in SibeliaZ are comparing it to the libraries listed below
Sorting:
- Nanopore data assembler☆156Updated 3 years ago
- Long-read mock community experiments☆105Updated 3 years ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated 2 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆102Updated this week
- A tool for Racon polishing of miniasm assemblies☆75Updated this week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- ☆147Updated 3 weeks ago
- Research release basecalling models and configurations☆110Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆182Updated 3 weeks ago
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- A fast K-mer counter for high-fidelity shotgun datasets☆129Updated this week
- Constructing a pangenome gene graph☆188Updated this week
- De novo assembly from Oxford Nanopore reads.☆83Updated this week
- A genomic k-mer counter (and sequence utility) with nice features.☆137Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- source code for EVM☆110Updated 6 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated this week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆164Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆137Updated this week
- Reference-free profiling of polyploid genomes☆116Updated 10 months ago
- ☆78Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Assembly statistic visualisation☆90Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆131Updated this week
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Comparison of multiple long read datasets☆132Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- Dfam Transposable Element Tools Docker container.☆91Updated last month