medvedevgroup / SibeliaZLinks
A fast whole-genome aligner based on de Bruijn graphs
☆156Updated 6 months ago
Alternatives and similar repositories for SibeliaZ
Users that are interested in SibeliaZ are comparing it to the libraries listed below
Sorting:
- Long-read mock community experiments☆104Updated 4 years ago
- Reference-free profiling of polyploid genomes☆139Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Foreign Contamination Screening caller scripts and documentation☆155Updated 10 months ago
- ☆145Updated 2 months ago
- ☆81Updated 5 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆120Updated 7 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 4 months ago
- Structural Variant Identification Method using Genome Assemblies☆132Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 8 months ago
- Interactive quality assessment of genome assemblies☆117Updated last month
- De novo assembly from Oxford Nanopore reads.☆88Updated 2 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Constructing a pangenome gene graph☆203Updated 5 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆154Updated last week
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- Nanopore data assembler☆163Updated 3 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 3 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆190Updated last month
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆89Updated last year
- A list of software for pangenomics☆165Updated last week
- The ARTIC fieldbioinformatics pipeline☆128Updated last week
- Assembly statistic visualisation☆93Updated 2 years ago
- Development version of Easyfig☆103Updated 2 years ago
- Yet another k-mer analyzer☆158Updated 3 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- ☆177Updated 3 months ago