dentearl / mafTools
Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
☆107Updated 2 years ago
Alternatives and similar repositories for mafTools
Users that are interested in mafTools are comparing it to the libraries listed below
Sorting:
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- A list of software for pangenomics☆111Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Same species annotation lift over pipeline.☆97Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 6 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- A library for running k-mers based GWAS☆109Updated 6 months ago
- Pangenome-based genome inference☆127Updated 3 weeks ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated 11 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 6 months ago
- Phased assembly variant caller☆115Updated 5 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆102Updated last year
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated 2 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆146Updated 3 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- accurate LiftOver tool for new genome assemblies☆125Updated 9 months ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- ☆71Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago