dentearl / mafToolsLinks
Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
☆107Updated 2 years ago
Alternatives and similar repositories for mafTools
Users that are interested in mafTools are comparing it to the libraries listed below
Sorting:
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated this week
- Same species annotation lift over pipeline.☆97Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- Mapping pipeline for data generated using Arima-HiC☆77Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A list of software for pangenomics☆114Updated 3 weeks ago
- Dfam Transposable Element Tools Docker container.☆91Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆96Updated 3 months ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 6 years ago
- Assembly statistic visualisation☆90Updated last year
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 4 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- NLR-Annotator upload☆66Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Synteny Imager☆62Updated 9 months ago
- A library for running k-mers based GWAS☆109Updated 7 months ago
- ☆71Updated 5 years ago
- Phased assembly variant caller☆116Updated 6 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Genome Annotation Without Nightmares☆45Updated 4 months ago
- Reference-free profiling of polyploid genomes☆116Updated 10 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆35Updated 4 years ago
- ☆44Updated 8 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 6 months ago