reubwn / collinearityLinks
scripts to parse and analyse MCScanX collinearity output
☆33Updated 5 years ago
Alternatives and similar repositories for collinearity
Users that are interested in collinearity are comparing it to the libraries listed below
Sorting:
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated last month
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 9 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- ☆35Updated 5 years ago
- ☆26Updated 4 years ago
- R package to draw syntenic plots in 3 different styles