reubwn / collinearity
scripts to parse and analyse MCScanX collinearity output
☆31Updated 5 years ago
Alternatives and similar repositories for collinearity:
Users that are interested in collinearity are comparing it to the libraries listed below
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- ☆32Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 11 months ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- A box of genomics tools☆21Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last week
- Genome alignment and synteny plots☆30Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆26Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Automatic evaluation of HGTs☆28Updated 3 months ago
- Domain based annotation of transposable elements☆19Updated last week
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆34Updated this week
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 7 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated last month