reubwn / collinearityLinks
scripts to parse and analyse MCScanX collinearity output
☆32Updated 5 years ago
Alternatives and similar repositories for collinearity
Users that are interested in collinearity are comparing it to the libraries listed below
Sorting:
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 8 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- ☆33Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 2 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- A box of genomics tools☆21Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- ☆26Updated 4 years ago
- Visualising discordant reads☆15Updated 10 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆35Updated 4 months ago
- ☆43Updated last year
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago