Code for the Brassica oleracea/rapa/napus genomic comparison
☆16Apr 29, 2021Updated 5 years ago
Alternatives and similar repositories for Brassica_oleracea_rapa_napus_code
Users that are interested in Brassica_oleracea_rapa_napus_code are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- Demographic analysis of Brassica oleracea☆10Updated this week
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 11 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated 11 months ago
- ☆11Dec 12, 2014Updated 11 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- ☆24Jun 9, 2017Updated 8 years ago
- ☆15Nov 11, 2019Updated 6 years ago
- A deep learning research platform that recognizes stock charts through Convolutional Neural Network (CNN).☆21Jul 7, 2016Updated 9 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- ☆16Oct 9, 2024Updated last year
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆22Aug 20, 2021Updated 4 years ago
- Genome-Phenome Wide Association Study☆15Feb 7, 2023Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- De novo annotation of young retrotransposons☆47Apr 24, 2026Updated last week
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Oct 5, 2021Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆92Jan 14, 2025Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆94Apr 23, 2026Updated last week
- Quickly transform data.frames into onehot encoded matrices☆11Apr 11, 2019Updated 7 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- A mosaic genome painting tool for plant genomes☆18Updated this week
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Mar 24, 2025Updated last year
- ☆10Sep 11, 2020Updated 5 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- ☆40Apr 19, 2026Updated 2 weeks ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆17Mar 14, 2022Updated 4 years ago