MaoYafei / GenoDup-PipelineLinks
This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.
☆25Updated 6 years ago
Alternatives and similar repositories for GenoDup-Pipeline
Users that are interested in GenoDup-Pipeline are comparing it to the libraries listed below
Sorting:
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆21Updated 6 years ago
- ☆28Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆42Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- B73Ab10 genome assembly methods☆17Updated 3 years ago
- Phylogenetic iDentification of Subgenomes☆10Updated 3 years ago
- ☆27Updated 6 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- ☆21Updated last year
- ☆28Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆24Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆25Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 8 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 3 months ago
- A box of genomics tools☆21Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- ☆16Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆28Updated 4 months ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago