jessicawleigh / popartLinks
General purpose population genetics software
☆15Updated 6 years ago
Alternatives and similar repositories for popart
Users that are interested in popart are comparing it to the libraries listed below
Sorting:
- ☆33Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Genome-Genome circle synteny☆25Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆61Updated 7 years ago
- Multi-genome synteny block visualization tool☆46Updated 8 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆59Updated this week
- ☆26Updated 7 months ago
- Tools and Utilities for msmc and msmc2☆48Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆73Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- orthology assignment using phylogenetic and network analyses☆47Updated 6 months ago
- HyPhy standalone analyses☆46Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Synteny Imager☆64Updated 2 months ago
- ☆25Updated last year
- ☆43Updated 4 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆44Updated 8 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 5 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago