General purpose population genetics software
☆19Jul 15, 2019Updated 7 years ago
Alternatives and similar repositories for popart
Users that are interested in popart are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Dec 9, 2025Updated 10 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆77Mar 29, 2022Updated 4 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- common bioinformatic scripts☆17Apr 28, 2021Updated 5 years ago
- Fast and frugal disk based k-mer counter☆15Apr 1, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- ☆19Jan 24, 2018Updated 8 years ago
- Estimate recombination rates from population genetic data☆72Jun 10, 2020Updated 6 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Population genetics analyses from NGS data☆28Mar 8, 2021Updated 5 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- HI-FEVER: A Nextflow pipeline for the high-throughput discovery and annotation of endogenous viral elements☆12May 28, 2026Updated 5 months ago
- ☆20Nov 18, 2021Updated 4 years ago
- ☆38Apr 14, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SambaR: Snp datA Management and Basic Analyses in R☆33Jul 9, 2026Updated 3 months ago
- ☆20Jun 15, 2024Updated 2 years ago
- ☆22May 27, 2024Updated 2 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆43Oct 12, 2023Updated 3 years ago
- Introduction to statistics using R and Rstudio☆10Mar 18, 2021Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. MuMIn — Multi-Model Inference☆11Mar 27, 2026Updated 7 months ago
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- R Package - Spatiotemporal Ancestry Interpolation and Search☆10Jun 28, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- Examples on how to use the karyoploteR R/Bioconductor package☆12Feb 3, 2023Updated 3 years ago
- Scripts for population genetics analysis☆21Nov 10, 2022Updated 3 years ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- Ejemplo de Repositorio Open Data en github☆12May 1, 2013Updated 13 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 4 years ago
- transposable element typing pipeline☆20Sep 28, 2026Updated last month
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Haplotype-based inference of recent effective population size in modern and ancient DNA samples☆14Apr 4, 2025Updated last year
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Jun 12, 2026Updated 4 months ago
- Bayesian analysis of hybrids☆12Feb 19, 2019Updated 7 years ago
- ☆25Mar 22, 2016Updated 10 years ago
- A genome alignment and visualization system☆36Nov 15, 2020Updated 5 years ago
- fastHaN is a fast and scalable program for constructing haplotype networks for large samples☆21Feb 14, 2024Updated 2 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago