jessicawleigh / popartLinks
General purpose population genetics software
☆13Updated 6 years ago
Alternatives and similar repositories for popart
Users that are interested in popart are comparing it to the libraries listed below
Sorting:
- Likelihood-based Selective Sweep Detection☆39Updated last year
- ☆32Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated last year
- ☆50Updated last month
- ☆26Updated 4 months ago
- ☆43Updated last month
- Infer demographic history with the Moran model☆47Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- Portable solution to generate genome alignment chains using lastz☆57Updated last month
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Tools and Utilities for msmc and msmc2☆48Updated last year
- ☆44Updated 8 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆23Updated 2 years ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 5 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago