jessicawleigh / popart
General purpose population genetics software
☆12Updated 5 years ago
Alternatives and similar repositories for popart:
Users that are interested in popart are comparing it to the libraries listed below
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- ☆32Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- assembly evaluation tool☆34Updated 2 years ago
- ☆24Updated 7 years ago
- A box of genomics tools☆21Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last month
- Tools and Utilities for msmc and msmc2☆47Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated 2 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆23Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- ☆22Updated 10 months ago
- ☆19Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated 3 weeks ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Plant genome assembly and annotation pipeline using snakemake☆38Updated last year
- Infer demographic history with the Moran model☆47Updated 10 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated 2 years ago
- Automated pipeline for running CoalHMM☆12Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year