jessicawleigh / popartLinks
General purpose population genetics software
☆15Updated 6 years ago
Alternatives and similar repositories for popart
Users that are interested in popart are comparing it to the libraries listed below
Sorting:
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 7 months ago
- ☆26Updated 6 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- ☆65Updated last week
- k-mer learning materials☆74Updated 6 months ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated 3 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Portable solution to generate genome alignment chains using lastz☆58Updated 3 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- Genome-Genome circle synteny☆25Updated last year
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆32Updated 4 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆52Updated 2 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 4 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Multi-genome synteny block visualization tool☆44Updated 7 months ago
- Tools and Utilities for msmc and msmc2☆48Updated last month
- finshingTool☆54Updated 8 years ago
- HyPhy standalone analyses☆46Updated 2 weeks ago
- Synteny Imager☆64Updated last month