bioinfomaticsCSU / MACLinks
Merging assemblies by using adjacency algebraic model and classification
☆22Updated 2 years ago
Alternatives and similar repositories for MAC
Users that are interested in MAC are comparing it to the libraries listed below
Sorting:
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- Consensus genome annotation using OMA☆26Updated 3 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 6 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆29Updated last week
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last week
- ☆28Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated last month
- Genome alignment and synteny plots☆32Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last week
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆31Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆20Updated last year
- The MafFilter genome alignment processor☆19Updated 4 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 2 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago