bioinfomaticsCSU / MACLinks
Merging assemblies by using adjacency algebraic model and classification
☆23Updated 2 years ago
Alternatives and similar repositories for MAC
Users that are interested in MAC are comparing it to the libraries listed below
Sorting:
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- ☆25Updated 10 months ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- ☆20Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 8 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 11 months ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated last week
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- The MafFilter genome alignment processor☆19Updated 2 months ago