bioinfomaticsCSU / MACLinks
Merging assemblies by using adjacency algebraic model and classification
☆22Updated 2 years ago
Alternatives and similar repositories for MAC
Users that are interested in MAC are comparing it to the libraries listed below
Sorting:
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last month
- Consensus genome annotation using OMA☆27Updated 4 months ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- ☆28Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 11 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 8 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 2 weeks ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆25Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated this week
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆33Updated 3 weeks ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆34Updated 3 months ago
- Diploid genome assembly analysis tools☆14Updated last year