oscarlr / MsPACLinks
Phase reads, assemble haplotypes and detect SVs
☆19Updated 4 years ago
Alternatives and similar repositories for MsPAC
Users that are interested in MsPAC are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- ☆31Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated last week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- ☆21Updated 6 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated last month
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- ☆17Updated last year
- ☆21Updated 5 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 9 months ago
- SV calling for diploid assemblies☆28Updated last year
- Phased structural variant discovery in pangenomes☆35Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 weeks ago
- ☆14Updated last year