oscarlr / MsPACLinks
Phase reads, assemble haplotypes and detect SVs
☆19Updated 5 years ago
Alternatives and similar repositories for MsPAC
Users that are interested in MsPAC are comparing it to the libraries listed below
Sorting:
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆31Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Kmer Analysis of Pileups for Genotyping☆33Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated last month
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 3 years ago
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- ☆16Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Archived version 1.0.2☆16Updated 6 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆18Updated last year
- ☆21Updated 9 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- Convert HAL to VG☆23Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆30Updated 5 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Updated last month