Alternatives and similar repositories for AGB

Users that are interested in AGB are comparing it to the libraries listed below

• kjenike / panagram
  ☆68Updated last month
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 3 months ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆86Updated last year
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆108Updated this week
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆78Updated 3 months ago
• nathanweeks / exonerate
  A fork of exonerate: a generic tool for sequence alignment
  ☆70Updated 2 years ago
• AntonBankevich / LJA
  ☆118Updated 2 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆91Updated last week
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆87Updated 4 years ago
• SamStudio8 / reticulatus
  A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
  ☆68Updated 4 years ago
• BioinformaticsToolsmith / Identity
  ☆35Updated last year
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆60Updated 6 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated 2 years ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆108Updated 10 months ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 9 months ago
• flexidot-bio / flexidot
  Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  ☆93Updated last month
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆85Updated last year
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆91Updated last year
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆101Updated 3 weeks ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆78Updated 5 years ago
• iqbal-lab-org / pandora
  Pan-genome inference and genotyping with long noisy or short accurate reads
  ☆119Updated 11 months ago
• Shamir-Lab / Recycler
  This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…
  ☆58Updated 4 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 2 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 4 months ago
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 5 years ago
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆71Updated 3 years ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆97Updated last year
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 3 weeks ago