almiheenko / AGBLinks
Interactive visualization of assembly graphs
☆83Updated 3 years ago
Alternatives and similar repositories for AGB
Users that are interested in AGB are comparing it to the libraries listed below
Sorting:
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated last month
- A tool for Racon polishing of miniasm assemblies☆78Updated last month
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated last year
- ☆66Updated last month
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated 3 weeks ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆105Updated 9 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 weeks ago
- Research release basecalling models and configurations☆115Updated 5 months ago
- Synteny Imager☆64Updated 3 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 3 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆95Updated last year
- k-mer learning materials☆80Updated 8 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Assembly statistic visualisation☆90Updated last year
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆92Updated 4 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated 11 months ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆70Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆69Updated last year
- A local-haplotagging-based small and structural variant caller☆87Updated 2 weeks ago