almiheenko / AGBLinks
Interactive visualization of assembly graphs
β82Updated 3 years ago
Alternatives and similar repositories for AGB
Users that are interested in AGB are comparing it to the libraries listed below
Sorting:
- πGenome assembly scaffolder using minimizer graphsβ84Updated 9 months ago
- A tool for Racon polishing of miniasm assembliesβ76Updated last month
- β116Updated this week
- Adapter trimmer for Oxford Nanopore reads using ab initio methodβ42Updated 7 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assembliesβ59Updated 5 years ago
- β63Updated last week
- ONT assembly and Illumina polishing pipelineβ89Updated 4 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.β80Updated 7 months ago
- Synteny Imagerβ63Updated 10 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore readsβ69Updated 3 years ago
- Assembly statistic visualisationβ90Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencingβ70Updated 3 years ago
- β83Updated last year
- Dotplot large Genomes in an Interactive, Efficient and Simple wayβ104Updated last week
- De novo assembly from Oxford Nanopore reads.β83Updated last month
- Peregrine: Fast Genome Assembler Using SHIMMER Indexβ102Updated 3 years ago
- Analysis components from Oxford Nanopore Researchβ93Updated 10 months ago
- PacBio hybrid error correction through iterative short read consensusβ61Updated 6 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Royeβ¦β59Updated 4 years ago
- Pan-genome inference and genotyping with long noisy or short accurate readsβ118Updated 7 months ago
- FastOMA is a scalable software package to infer orthology relationship.β77Updated last week
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.β54Updated 8 months ago
- A list of software for pangenomicsβ119Updated this week
- A scalable bacterial genome assembly, annotation and analysis pipelineβ74Updated last year
- β131Updated 2 months ago
- β78Updated 4 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.β80Updated 4 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomesβ58Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analysesβ91Updated last month
- Interactive quality assessment of genome assembliesβ102Updated 2 months ago