almiheenko / AGBLinks
Interactive visualization of assembly graphs
☆83Updated 3 years ago
Alternatives and similar repositories for AGB
Users that are interested in AGB are comparing it to the libraries listed below
Sorting:
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆49Updated 9 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- ☆84Updated last year
- ☆78Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆103Updated 11 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- ☆64Updated last month
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated 10 months ago
- ☆117Updated this week
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Synteny Imager☆64Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Assembly statistic visualisation☆90Updated last year
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Updated 8 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆80Updated 2 weeks ago
- A fast tool for hybrid genome assembly of long and short reads☆79Updated 5 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- De novo assembly from Oxford Nanopore reads.☆83Updated 3 months ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- k-mer learning materials☆74Updated 6 months ago
- Interactive quality assessment of genome assemblies☆105Updated 3 months ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated 3 weeks ago
- Microbiome classification pipeline☆66Updated 3 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆85Updated 9 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago