shohei-kojima / MEGAnE
MEGAnE
☆29Updated last year
Alternatives and similar repositories for MEGAnE:
Users that are interested in MEGAnE are comparing it to the libraries listed below
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Structural variant merging tool☆49Updated 6 months ago
- ☆26Updated last week
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆22Updated 8 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 4 months ago
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆20Updated 6 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated last month
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- Algorithm to detect germline and de novo transposon insertions☆27Updated 11 months ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 10 months ago
- ☆22Updated 11 months ago
- Error correction of ONT transcript reads☆59Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- ☆29Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- Drosophila transposable element canonical sequences☆28Updated 2 years ago