MEGAnE
☆34Sep 13, 2023Updated 2 years ago
Alternatives and similar repositories for MEGAnE
Users that are interested in MEGAnE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆125Apr 17, 2026Updated 2 months ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆266Jul 1, 2026Updated last week
- Use Thor's Axe to cut exons into their evolutionary building blocks☆12Jun 29, 2026Updated last week
- Identify and annotate TE-mediated insertions in long-read sequence data☆48Mar 25, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Estimate locus specific human LINE-1 expression.☆40Jan 19, 2026Updated 5 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆115Jun 24, 2026Updated 2 weeks ago
- Application of pan-genome for population☆121Oct 26, 2025Updated 8 months ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Jun 11, 2026Updated 3 weeks ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A structural variation pipeline for short-read sequencing☆205Updated this week
- ☆34Jun 12, 2024Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Oct 17, 2024Updated last year
- Telomerecat: The telomere computational analysis tool☆22Aug 4, 2021Updated 4 years ago
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆12Nov 14, 2024Updated last year
- ☆12Dec 1, 2021Updated 4 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆107May 31, 2025Updated last year
- Algorithm to detect germline and de novo transposon insertions☆36Jun 26, 2026Updated last week
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- ☆46Jun 27, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 5 months ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 8, 2026Updated last month
- Pangenome-based genome inference☆174Jun 15, 2026Updated 3 weeks ago
- starfish: a modular toolkit for giant mobile element annotation☆40Dec 12, 2024Updated last year
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated last year
- FamDB file format library and utilities☆44Jun 1, 2026Updated last month
- Jasmine: SV Merging Across Samples☆254Dec 20, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆27Sep 15, 2025Updated 9 months ago
- A translator from WDL to CWL v1.2☆28Jun 24, 2026Updated 2 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 3 months ago
- Crash Course on Approximate Bayesian Computation in Population Genetics☆11Sep 19, 2022Updated 3 years ago
- ☆37Feb 22, 2023Updated 3 years ago
- 🧬Genomes to proteins, multi-level visualization library☆16May 22, 2026Updated last month