Phasing of dikaryotic fungal genome assemblies
☆13Mar 1, 2023Updated 3 years ago
Alternatives and similar repositories for NuclearPhaser
Users that are interested in NuclearPhaser are comparing it to the libraries listed below
Sorting:
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Updated this week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- ☆16Jan 14, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆42Jun 17, 2023Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- ☆10Jun 9, 2020Updated 5 years ago
- deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignme…☆12Oct 22, 2025Updated 4 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated last month
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Feb 7, 2026Updated last month
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- Web based viewer for small to medium GFA format files, similar to Bandage☆12Nov 14, 2025Updated 3 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆27Feb 5, 2026Updated last month
- Chromosome-level synteny plotting using orthologous regions☆31Sep 19, 2024Updated last year
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- ☆17Feb 11, 2026Updated 3 weeks ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆20Mar 2, 2026Updated last week
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Example of SGTK application for E.coli dataset:☆31Jul 13, 2020Updated 5 years ago
- ☆22Updated this week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- ☆21Jan 13, 2026Updated last month
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆15Updated this week
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 26, 2026Updated last week
- Centromere mapping and annotation pipeline☆23Feb 28, 2026Updated last week
- ☆39Feb 22, 2023Updated 3 years ago