alachins / sweedLinks
Likelihood-based Selective Sweep Detection
☆40Updated 2 years ago
Alternatives and similar repositories for sweed
Users that are interested in sweed are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆49Updated 5 months ago
- Tools and Utilities for msmc and msmc2☆49Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆31Updated 10 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- ☆43Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆24Updated 8 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Draw a dot plot from a paf alignment☆35Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated last month
- A box of genomics tools☆21Updated 5 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- ☆33Updated 4 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆12Updated 2 years ago
- ☆29Updated 7 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago