millanek / fineRADstructureLinks
A package for population structure inference from RAD-seq data
☆33Updated 4 years ago
Alternatives and similar repositories for fineRADstructure
Users that are interested in fineRADstructure are comparing it to the libraries listed below
Sorting:
- Population assignment analysis using R☆16Updated 2 months ago
- ☆30Updated 2 years ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Updated 5 years ago
- Repository for speciation genomics website☆26Updated 2 weeks ago
- method for modeling continuous and discrete population genetic structure☆36Updated last year
- Collection of Python scripts for parsing/analyses of RAD-seq data☆23Updated 6 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆62Updated 10 months ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆16Updated 3 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- ☆19Updated 7 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- ☆41Updated 2 years ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- software for the MAPS method☆24Updated 6 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆29Updated 4 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated last month
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆31Updated 2 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated 2 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆60Updated 7 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated 3 weeks ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- GONE: Scripts, programs and an example data set☆46Updated last month
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- microhaplotype visualizer and analyzer☆19Updated 4 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Updated 6 years ago