A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC
☆16Apr 6, 2025Updated last year
Alternatives and similar repositories for MSMC-IM
Users that are interested in MSMC-IM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- A set of tools for modelling ancestry patterns along the genome.☆24Aug 26, 2026Updated last week
- ☆22Jan 11, 2024Updated 2 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Genealogical Estimation of Variant Age (GEVA)☆33Sep 30, 2021Updated 4 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 5 months ago
- ☆13Aug 18, 2023Updated 3 years ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆71Mar 27, 2026Updated 5 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 13 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MSMC2 Scripts☆28May 29, 2026Updated 3 months ago
- ☆16Jan 6, 2022Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 7 months ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆32May 18, 2026Updated 3 months ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated 2 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Oct 25, 2020Updated 5 years ago
- Fast implementation of the neighbour-joining phylogenetic inference method☆23May 23, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 7 months ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆27Jul 8, 2022Updated 4 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Aug 13, 2026Updated 2 weeks ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 3 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆12Nov 25, 2024Updated last year
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Sep 19, 2020Updated 5 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆15Jun 17, 2023Updated 3 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- ☆57Feb 14, 2022Updated 4 years ago
- ☆71Dec 5, 2022Updated 3 years ago