A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC
☆16Apr 6, 2025Updated 11 months ago
Alternatives and similar repositories for MSMC-IM
Users that are interested in MSMC-IM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- A set of tools for modelling ancestry patterns along the genome.☆24Mar 13, 2026Updated last week
- ☆21Jan 11, 2024Updated 2 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Sep 30, 2021Updated 4 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆11Updated this week
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 2 months ago
- MSMC2 Scripts☆28Sep 24, 2025Updated 6 months ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated last year
- ☆16Jan 6, 2022Updated 4 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Oct 25, 2020Updated 5 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆20Dec 3, 2022Updated 3 years ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆31Mar 11, 2026Updated 2 weeks ago
- Fast implementation of the neighbour-joining phylogenetic inference method☆22May 23, 2020Updated 5 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆46Mar 7, 2024Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 2 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 11 months ago
- ☆10Jan 18, 2023Updated 3 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 3 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- ☆57Feb 14, 2022Updated 4 years ago
- ☆68Dec 5, 2022Updated 3 years ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week