ksamuk / pixyLinks
Software for painlessly estimating average nucleotide diversity within and between populations
☆148Updated 2 months ago
Alternatives and similar repositories for pixy
Users that are interested in pixy are comparing it to the libraries listed below
Sorting:
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆183Updated last year
- SMC++ infers population history from whole-genome sequence data.☆169Updated last year
- Version 5 of the CAFE phylogenetics software☆158Updated 10 months ago
- Recovering genes from targeted sequence capture data☆130Updated 6 months ago
- Reference-free profiling of polyploid genomes☆137Updated 2 months ago
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 5 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆181Updated last month
- Scripts for analysis used during the course☆93Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆101Updated last month
- A library for running k-mers based GWAS☆123Updated last year
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Updated last week
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆165Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆183Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 7 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- ☆33Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- ☆228Updated 11 months ago
- ☆96Updated 4 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- Yet another Hi-C scaffolding tool☆168Updated last year
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆154Updated last month
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆86Updated last month