A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)
☆15Aug 1, 2013Updated 12 years ago
Alternatives and similar repositories for Inferring-demography-from-IBS
Users that are interested in Inferring-demography-from-IBS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 8 years ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆31Sep 27, 2019Updated 6 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 3 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- ☆30Oct 14, 2022Updated 3 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 12 years ago
- ☆48Oct 17, 2025Updated 9 months ago
- A Python package for landscape genomic simulation☆13Dec 15, 2025Updated 7 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Jun 17, 2026Updated last month
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Jul 17, 2019Updated 7 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 6 months ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated last year
- A set of tools for modelling ancestry patterns along the genome.☆24Updated this week
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆28Oct 7, 2021Updated 4 years ago
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 4 months ago
- An R package for the spatial analysis of population genetic data.☆20Jun 21, 2026Updated last month