Alternatives and similar repositories for mauve

Users that are interested in mauve are comparing it to the libraries listed below

• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆36Updated 7 years ago
• BFL-lab / Mfannot
  MFannot is a program for the annotation of mitochondrial and plastid genomes
  ☆22Updated last year
• fenghen360 / HomBlocks
  HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
  ☆34Updated 7 years ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆67Updated 7 years ago
• paulstothard / cgview
  CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
  ☆44Updated 10 months ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆60Updated 2 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆40Updated 4 months ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 4 years ago
• rhysf / Synima
  Synteny Imager
  ☆62Updated 9 months ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆67Updated 5 months ago
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆40Updated 4 years ago
• nextgenusfs / funannotate2
  Eukaryotic genome annotation software.
  ☆18Updated last week
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆42Updated 2 months ago
• stajichlab / OrthoMCL
  ☆25Updated 9 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated last year
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆53Updated last month
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated 2 years ago
• LANL-Bioinformatics / PhaME
  Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…
  ☆33Updated last year
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 9 months ago
• ccdmb / predector
  Effector prediction pipeline based on protein properties.
  ☆15Updated 9 months ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆46Updated 5 months ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated 2 years ago
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆28Updated 3 years ago