koadman / mauveLinks
A genome alignment and visualization system
☆28Updated 4 years ago
Alternatives and similar repositories for mauve
Users that are interested in mauve are comparing it to the libraries listed below
Sorting:
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆78Updated last month
- Synteny Imager☆63Updated 2 weeks ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 6 months ago
- Visualize whole genome alignments as linear maps☆73Updated 10 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆35Updated 6 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- ☆27Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- HyPhy standalone analyses☆46Updated 3 months ago
- A program for detection of tRNA genes☆64Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated last year
- Microbiome classification pipeline☆66Updated 2 months ago