Alternatives and similar repositories for mauve

Users that are interested in mauve are comparing it to the libraries listed below

• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆37Updated 7 years ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆41Updated 7 months ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆67Updated 2 years ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆68Updated 2 months ago
• rhysf / Synima
  Synteny Imager
  ☆64Updated last month
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆53Updated 2 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆82Updated 2 weeks ago
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆47Updated 6 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated last year
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated 10 months ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆25Updated 3 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• veg / hyphy-analyses
  HyPhy standalone analyses
  ☆46Updated last month
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆63Updated last year
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆74Updated 7 months ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆44Updated 2 months ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆61Updated 4 months ago
• fenghen360 / HomBlocks
  HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
  ☆35Updated 8 years ago
• JLSteenwyk / PhyKIT
  a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
  ☆74Updated last month
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated last year
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆45Updated last year
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆50Updated last year
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆19Updated 5 years ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆59Updated this week