Alternatives and similar repositories for jumboDB

Users that are interested in jumboDB are comparing it to the libraries listed below

• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆25Updated 11 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 4 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 2 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 10 months ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 6 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆30Updated 3 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• MoinSebi / gfa2bin
  ☆25Updated 2 months ago
• ryought / mummer-idotplot
  Generate interactive dotplot from mummer4 output using plotly
  ☆27Updated 5 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆31Updated 2 weeks ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 5 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆25Updated 4 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 4 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆27Updated 3 weeks ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 2 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• shilpagarg / sdip
  ☆10Updated 5 years ago