AntonBankevich / jumboDBLinks
De Bruijn graph construction for large k.
☆17Updated 4 years ago
Alternatives and similar repositories for jumboDB
Users that are interested in jumboDB are comparing it to the libraries listed below
Sorting:
- JTK -- a regional diploid genome assembler☆25Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- GBWT-based handle graph☆31Updated this week
- convert variation graph alignments to coverage maps over nodes☆26Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 5 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆28Updated last week
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Long-read aligner to pangenome graphs☆29Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated this week
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- ☆10Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- General purpose utility related to GAF files☆29Updated last month
- ☆16Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- ☆23Updated 4 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago
- ☆28Updated 5 months ago