tsackton / linked-selectionLinks
☆24Updated 8 years ago
Alternatives and similar repositories for linked-selection
Users that are interested in linked-selection are comparing it to the libraries listed below
Sorting:
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆42Updated last year
- Infer demographic history with the Moran model☆48Updated 4 months ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆16Updated last year
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- A program to call variants from genome alignment☆81Updated 6 months ago
- ☆24Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆44Updated 8 years ago
- TGS scaffolding☆47Updated 3 years ago
- ☆53Updated 4 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆21Updated last week
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- GONE: Scripts, programs and an example data set☆47Updated 3 months ago
- ☆17Updated 3 years ago