rega-cev / virulign
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
☆32Updated 3 years ago
Alternatives and similar repositories for virulign:
Users that are interested in virulign are comparing it to the libraries listed below
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- Find Unique genomic Regions☆29Updated last month
- An R package designed for drawing gene arrow maps☆43Updated this week
- Build a map of genes present across a set of microbial genomes☆13Updated this week
- Reference-guided multiple sequence alignment of viral genomes☆65Updated last month
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- Automatic Assembly For The Fungi☆19Updated 3 weeks ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆82Updated 2 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 4 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆43Updated last month
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Pipeline for the identification of (coding) gene structures in draft genomes.☆26Updated 9 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 6 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆56Updated last year
- multiPhATE with comparative genomics☆18Updated 3 years ago
- AMBER: Assessment of Metagenome BinnERs☆29Updated last month
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- ☆23Updated last year
- Influenza genome analysis Nextflow workflow☆26Updated last month
- Library of sketching functions used by PopPUNK☆30Updated last month
- ☆44Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated this week