VIRULIGN: fast codon-correct alignment and annotation of viral genomes
☆35Apr 2, 2021Updated 4 years ago
Alternatives and similar repositories for virulign
Users that are interested in virulign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 3 months ago
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 6 months ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 4 months ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks☆15Sep 22, 2018Updated 7 years ago
- Virus discovery☆17Mar 10, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆13Mar 4, 2026Updated 3 weeks ago
- ☆20Nov 18, 2021Updated 4 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- ☆14Apr 19, 2021Updated 4 years ago
- BioBTree v2: An MCP-enabled biomedical graph database unifying 50+ datasets.☆16Mar 18, 2026Updated last week
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆30Sep 21, 2023Updated 2 years ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Mar 21, 2025Updated last year
- General purpose population genetics software☆16Jul 15, 2019Updated 6 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated last year
- distance based phylogenetic placement☆27Feb 28, 2024Updated 2 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction).☆20May 3, 2017Updated 8 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- ☆12May 12, 2019Updated 6 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last month