rega-cev / virulignLinks
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
☆35Updated 4 years ago
Alternatives and similar repositories for virulign
Users that are interested in virulign are comparing it to the libraries listed below
Sorting:
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Influenza genome analysis Nextflow workflow☆24Updated 3 months ago
- Detection of incorrectly labeled sequences across kingdoms☆87Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- ☆43Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Convert genbank files to a swath of other formats☆24Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 11 months ago
- Gene-flank analysis tool☆34Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated last week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- ☆26Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago