xiaochuanle / MECAT2Links
☆71Updated 5 years ago
Alternatives and similar repositories for MECAT2
Users that are interested in MECAT2 are comparing it to the libraries listed below
Sorting:
- Genomic related tools☆71Updated 3 years ago
- ☆77Updated 5 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- Pangenome-based genome inference☆139Updated 3 weeks ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆109Updated 4 years ago
- source code for EVM☆116Updated 8 months ago
- Collection of tools for the analysis of CpG data☆90Updated last month
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- A program to call variants from genome alignment☆81Updated 3 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆97Updated 3 months ago
- Application of pan-genome for population☆108Updated 10 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆85Updated last year
- Neural network classification of TE☆92Updated 2 months ago
- ☆44Updated 8 years ago
- Phased assembly variant caller☆125Updated 8 months ago
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- Dfam Transposable Element Tools Docker container.☆100Updated last week
- A list of software for pangenomics☆125Updated 2 weeks ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆95Updated last week
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆102Updated 7 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆123Updated 3 weeks ago
- NLR-Annotator upload☆71Updated 2 years ago
- Simple pileup-based variant caller☆92Updated 4 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago