xiaochuanle / MECAT2
☆70Updated 4 years ago
Alternatives and similar repositories for MECAT2:
Users that are interested in MECAT2 are comparing it to the libraries listed below
- Genomic related tools☆71Updated 3 years ago
- Collection of tools for the analysis of CpG data☆76Updated this week
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆48Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆85Updated 2 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆29Updated 3 years ago
- ☆73Updated 6 months ago
- Dfam Transposable Element Tools Docker container.☆88Updated 2 months ago
- NLR-Annotator upload☆62Updated last year
- ☆43Updated 8 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆84Updated 3 weeks ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- ☆76Updated 5 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆82Updated 11 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Long Reads Annotation pipeline☆71Updated 2 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Mapping pipeline for data generated using Arima-HiC☆71Updated 8 months ago
- Pangenome-based genome inference☆121Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last week
- Pipeline to convert a haploid assembly into diploid☆95Updated last week
- Reference-free profiling of polyploid genomes☆112Updated 6 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Neural network classification of TE☆87Updated 2 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆65Updated last year
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆108Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- A program to call variants from genome alignment☆77Updated 10 months ago