Alternatives and similar repositories for MECAT2:

Users that are interested in MECAT2 are comparing it to the libraries listed below

• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆50Updated 5 years ago
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆70Updated 3 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆89Updated 5 months ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆80Updated 2 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 9 months ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆47Updated 2 years ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆33Updated 3 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆90Updated last month
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆65Updated last year
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆38Updated 4 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆128Updated last week
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆116Updated 4 years ago
• daewoooo / SVbyEye
  ☆87Updated last month
• liangclab / HERA
  ☆76Updated 5 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆109Updated 4 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆111Updated last week
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆62Updated 4 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• chenlianfu / geta
  ☆78Updated 9 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆89Updated 2 weeks ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆79Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆125Updated 8 months ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆50Updated last year
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago