Alternatives and similar repositories for MECAT2

Users that are interested in MECAT2 are comparing it to the libraries listed below

• liangclab / HERA
  ☆77Updated 6 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆121Updated last year
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆75Updated 4 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆102Updated 6 months ago
• xiaochuanle / MECAT
  MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
  ☆111Updated 5 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆165Updated last week
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆53Updated 5 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 5 years ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆116Updated 2 months ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆97Updated 3 months ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆37Updated 4 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆76Updated 2 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆40Updated 5 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• arzwa / wgd
  Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…
  ☆86Updated 2 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 8 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆153Updated last month
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 8 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆129Updated last month
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆66Updated 5 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆109Updated this week
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆109Updated 11 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 7 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 9 years ago
• JinfengChen / Scripts
  ☆76Updated 5 years ago
• fbemm / onefc-oneasm
  Simple code snippets and data for the One Flowcell - One Assembly study
  ☆35Updated 8 years ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago