Psy-Fer / interARTIC
InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
☆30Updated last year
Alternatives and similar repositories for interARTIC:
Users that are interested in interARTIC are comparing it to the libraries listed below
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 10 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆38Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- de.NBI Nanopore Training Course☆19Updated 2 years ago
- ☆26Updated last month
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 11 months ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆22Updated 2 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆34Updated 4 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Find Unique genomic Regions☆29Updated last week