nanoporetech / sloikaLinks
Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling
☆25Updated 2 years ago
Alternatives and similar repositories for sloika
Users that are interested in sloika are comparing it to the libraries listed below
Sorting:
- ☆49Updated 7 months ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 11 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- ☆29Updated 4 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 3 months ago
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 7 months ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- ☆31Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago