nanoporetech / sloikaLinks
Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling
☆25Updated 3 years ago
Alternatives and similar repositories for sloika
Users that are interested in sloika are comparing it to the libraries listed below
Sorting:
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- ☆30Updated last year
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Pan-Genomic Matching Statistics☆55Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- ☆30Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- A versatile toolkit for k-mers with taxonomic information