Alternatives and similar repositories for sloika

Users that are interested in sloika are comparing it to the libraries listed below

• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 5 years ago
• ArtRand / signalAlign
  HMM-HDP models for MinION signal alignments
  ☆46Updated 8 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆64Updated 4 years ago
• dayzerodx / counterr
  ☆30Updated last year
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆44Updated 6 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆58Updated 3 months ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 4 years ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 9 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆89Updated 3 weeks ago
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• nanoporetech / pyguppyclient
  Python client library for Guppy
  ☆32Updated 3 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆54Updated last year
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆44Updated 3 months ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated last year
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆39Updated 2 years ago
• will-rowe / groot
  A resistome profiler for Graphing Resistance Out Of meTagenomes
  ☆65Updated 5 years ago
• GATB / dsk
  k-mer counting software
  ☆39Updated 3 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated last year
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆74Updated 2 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 9 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated 2 years ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆47Updated 4 years ago
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆59Updated last year
• LooseLab / bulkvis
  ☆49Updated last year
• mcfrith / tandem-genotypes
  ☆49Updated last year
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆50Updated 4 years ago
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆51Updated 3 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 5 months ago