xukaili / CandiHapLinks
A haplotype analysis toolkit for natural variation study.
☆31Updated 2 years ago
Alternatives and similar repositories for CandiHap
Users that are interested in CandiHap are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆52Updated 4 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- ☆21Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆25Updated 3 years ago
- ☆16Updated last year
- read and analyse RepeatMasker output☆27Updated 2 years ago
- ☆42Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆16Updated 6 years ago
- ☆44Updated last year
- ☆29Updated 2 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- Build haplotye and generate figures☆19Updated 2 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 5 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆36Updated last year