xukaili / CandiHap
A haplotype analysis toolkit for natural variation study.
☆30Updated last year
Alternatives and similar repositories for CandiHap:
Users that are interested in CandiHap are comparing it to the libraries listed below
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated 3 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- repository for code used in analysis of open wild wheat consortium☆16Updated 3 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- ☆17Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆26Updated 7 months ago
- scripts☆15Updated 6 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆17Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆37Updated last week
- ☆24Updated 7 years ago
- ☆16Updated 5 months ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- ☆16Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 10 months ago
- Build haplotye and generate figures☆18Updated 3 years ago
- ☆21Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- Selection outlier scan with population branch statistic☆13Updated last year
- Scripts of population genomics analysis☆35Updated 6 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆21Updated 5 years ago
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 8 months ago
- ☆42Updated 10 months ago