xukaili / CandiHapLinks
A haplotype analysis toolkit for natural variation study.
☆30Updated 2 years ago
Alternatives and similar repositories for CandiHap
Users that are interested in CandiHap are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆42Updated last year
- Build haplotye and generate figures☆18Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- ☆28Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 9 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- repository for code used in analysis of open wild wheat consortium☆17Updated 3 years ago
- ☆24Updated 2 years ago
- ☆21Updated 3 years ago
- ☆42Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- ☆22Updated 6 years ago
- ☆16Updated 5 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- The IntroBlocker ancestry inference algorithm☆16Updated last year
- ☆16Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆48Updated last month
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated 3 weeks ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- Automated pipeline for running CoalHMM☆13Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago