xukaili / CandiHap
A haplotype analysis toolkit for natural variation study.
☆30Updated last year
Alternatives and similar repositories for CandiHap:
Users that are interested in CandiHap are comparing it to the libraries listed below
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 months ago
- ☆16Updated 6 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated 3 weeks ago
- scripts☆16Updated 6 years ago
- ☆18Updated 2 years ago
- ☆24Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆26Updated 8 months ago
- ☆21Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆37Updated last week
- Build haplotye and generate figures☆18Updated 3 years ago
- repository for code used in analysis of open wild wheat consortium☆16Updated 3 years ago
- a Semi-automated pipeline for assembling T2T genome☆15Updated last week
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- ☆9Updated 9 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- A machine learning-based genotyping tool for structural variation in short reads☆17Updated 2 weeks ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Automated pipeline for running CoalHMM☆12Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 9 months ago
- ☆29Updated 7 months ago
- ☆21Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆29Updated last year