A haplotype analysis toolkit for natural variation study.
☆31Oct 3, 2023Updated 2 years ago
Alternatives and similar repositories for CandiHap
Users that are interested in CandiHap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build haplotye and generate figures☆19Nov 4, 2025Updated 4 months ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- ☆21Sep 6, 2024Updated last year
- ☆21Sep 22, 2022Updated 3 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16Jul 29, 2023Updated 2 years ago
- iPat allows you to perform GWAS and GS with drags and clicks!☆11Jul 12, 2022Updated 3 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆207Jul 5, 2025Updated 8 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Sep 26, 2025Updated 6 months ago
- Draw the Gene structure based on the GFF and gene's ID☆10Jun 13, 2020Updated 5 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆103Aug 27, 2025Updated 7 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆103Jun 13, 2022Updated 3 years ago
- fastHaN is a fast and scalable program for constructing haplotype networks for large samples☆19Feb 14, 2024Updated 2 years ago
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆325Mar 11, 2026Updated 2 weeks ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Mar 24, 2025Updated last year
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 4 months ago
- repository for code used in analysis of open wild wheat consortium☆18Nov 23, 2021Updated 4 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆20May 17, 2023Updated 2 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Aug 1, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Jan 19, 2022Updated 4 years ago
- ☆26Apr 22, 2025Updated 11 months ago
- Genome Association Predict Integrate Tools☆222Mar 10, 2026Updated 2 weeks ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆54Aug 27, 2025Updated 7 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Mar 10, 2026Updated 2 weeks ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Oct 27, 2023Updated 2 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆46Sep 22, 2025Updated 6 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated last month
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Mar 18, 2026Updated last week