benedictpaten / marginPhase
☆34Updated 4 years ago
Alternatives and similar repositories for marginPhase:
Users that are interested in marginPhase are comparing it to the libraries listed below
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆48Updated 6 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆31Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆79Updated 8 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆33Updated 9 months ago
- Variant annotation and merging pipeline☆31Updated last week
- SV genotyping with long reads☆40Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆20Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- ☆21Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago