☆35Feb 20, 2020Updated 6 years ago
Alternatives and similar repositories for marginPhase
Users that are interested in marginPhase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆37Mar 4, 2026Updated 7 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- ☆85Mar 3, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆46Jun 21, 2020Updated 6 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 6 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 6 years ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 3 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- Linear-time, low-memory construction of variation graphs☆20Aug 28, 2026Updated last month
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆28Apr 9, 2025Updated last year
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 8 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 2 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Graph based multi genome aligner☆49Sep 17, 2021Updated 5 years ago
- A tool for Racon polishing of miniasm assemblies☆84Jul 24, 2026Updated 2 months ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 4 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆148Sep 17, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Oct 13, 2021Updated 4 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago