benedictpaten / marginPhase

Related projects ⓘ

Alternatives and complementary repositories for marginPhase

• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 3 years ago
• mcfrith / tandem-genotypes
  ☆45Updated 4 months ago
• arnederoeck / NanoSatellite
  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
  ☆32Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆24Updated 2 weeks ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 5 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 4 years ago
• PacificBiosciences / apps-scripts
  Miscellaneous scripts for applications of PacBio systems
  ☆25Updated 2 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆45Updated 5 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆54Updated last year
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 2 years ago
• MeHelmy / princess
  ☆79Updated 6 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆29Updated last week
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆34Updated 2 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆26Updated 3 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• shilpagarg / DipAsm
  ☆77Updated 4 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• uio-bmi / two_step_graph_mapper
  ☆21Updated 5 years ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 2 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆45Updated 2 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 4 years ago