stajichlab / OrthoMCLLinks
☆25Updated 9 years ago
Alternatives and similar repositories for OrthoMCL
Users that are interested in OrthoMCL are comparing it to the libraries listed below
Sorting:
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆32Updated 4 years ago
- ☆26Updated 4 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 2 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Genome Annotation Pipeline☆35Updated 9 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- Genome-Genome circle synteny☆25Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆18Updated 5 months ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 4 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆11Updated 10 years ago