Alternatives and similar repositories for SNPFILT

Users that are interested in SNPFILT are comparing it to the libraries listed below

• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆62Updated 10 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 3 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated 3 weeks ago
• esayyari / DiscoVista
  ☆41Updated 2 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆46Updated last month
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 2 years ago
• clairemerot / physalia_adaptation_course
  ☆18Updated 2 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆37Updated last year
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆17Updated last year
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• StevenMicheletti / poolparty
  Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R
  ☆21Updated 3 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆35Updated 4 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆33Updated 4 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆33Updated 4 years ago
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 8 months ago
• clairemerot / angsd_pipeline
  ☆27Updated 2 years ago
• mgaynor1 / nQuack
  An R package for predicting ploidal level from sequence data using site-based heterozygosity 
  ☆17Updated 3 weeks ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated 2 weeks ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆21Updated 5 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated 2 years ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆20Updated 3 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year