Alternatives and similar repositories for SNPFILT:

Users that are interested in SNPFILT are comparing it to the libraries listed below

• clairemerot / angsd_pipeline
  ☆26Updated last year
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• BenjaminPeter / rangeexpansion
  ☆13Updated 7 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated this week
• esayyari / DiscoVista
  ☆39Updated last year
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated last month
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 9 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆34Updated last year
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆20Updated 5 years ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated last week
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆16Updated 5 months ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 6 months ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 7 months ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆16Updated 10 months ago
• StevenMicheletti / poolparty
  Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R
  ☆20Updated 3 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• omys-omics / triangulaR
  Calculate Hybrid Index and Heterozygosity from SNP data
  ☆10Updated 3 weeks ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• qiyunzhu / BeforePhylo
  Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
  ☆10Updated 10 years ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆14Updated 6 months ago
• mgaynor1 / nQuack
  An R package for predicting ploidal level from sequence data using site-based heterozygosity 
  ☆15Updated 2 months ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 3 months ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated last year