ramachandran-lab / pongLinks
Fast analysis and visualization of latent clusters in population genetic data
☆77Updated 3 years ago
Alternatives and similar repositories for pong
Users that are interested in pong are comparing it to the libraries listed below
Sorting:
- Haplotype based scans for selection☆137Updated last month
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆100Updated 3 months ago
- ☆95Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆92Updated last year
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 11 months ago
- A library for running k-mers based GWAS☆122Updated last year
- NLR-Annotator upload☆75Updated 2 years ago
- Scripts for analysis used during the course☆93Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Useful bioinformatic scripts☆58Updated last year
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Genome Scripts used in fungal comparative genomics☆66Updated 5 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆106Updated 3 weeks ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆41Updated 2 years ago
- ☆24Updated 8 years ago
- Presentations from the course☆38Updated 2 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago