Fast analysis and visualization of latent clusters in population genetic data
☆77Mar 29, 2022Updated 4 years ago
Alternatives and similar repositories for pong
Users that are interested in pong are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆92Jun 14, 2021Updated 5 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Haplotype based scans for selection☆151Jun 5, 2026Updated 5 months ago
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated 4 months ago
- A set of tools for modelling ancestry patterns along the genome.☆24Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- ☆30Oct 14, 2022Updated 4 years ago
- LASSI-Plus: A program to calculate haplotype frequency spectrum statistics☆13Sep 29, 2026Updated last month
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- ☆13Aug 18, 2023Updated 3 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆50Mar 7, 2024Updated 2 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genetic Algorithm for Demographic Model Analysis☆60Feb 3, 2026Updated 9 months ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 7 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆50May 26, 2026Updated 5 months ago
- A software package for local ancestry inference and haplotype phasing☆46Apr 20, 2023Updated 3 years ago
- Rapid population clustering with autoencoders☆90Sep 29, 2025Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆170Sep 19, 2026Updated last month
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- General purpose population genetics software☆19Jul 15, 2019Updated 7 years ago
- A pipeline that accepts a VCF file to run through Admixture☆67May 3, 2026Updated 6 months ago
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆62Oct 23, 2026Updated 2 weeks ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- ☆11Feb 14, 2023Updated 3 years ago
- Tools test whether admixture occurred and more☆237Jul 13, 2026Updated 3 months ago
- Module for analysing admixture graphs☆30Apr 30, 2018Updated 8 years ago
- ☆73Dec 5, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Feb 27, 2025Updated last year
- Likelihood-based Selective Sweep Detection☆43Oct 12, 2023Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆61Jun 20, 2026Updated 4 months ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 9 months ago
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated 2 years ago
- Recomb-Mix: a local ancestry inference tool☆18Oct 28, 2026Updated last week
- Hail batch pipeline and scripts for local ancestry inference☆10Oct 6, 2025Updated last year