ramachandran-lab / pong
Fast analysis and visualization of latent clusters in population genetic data
☆73Updated 3 years ago
Alternatives and similar repositories for pong:
Users that are interested in pong are comparing it to the libraries listed below
- Haplotype based scans for selection☆123Updated last week
- ☆84Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- NLR-Annotator upload☆64Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆84Updated 3 weeks ago
- Code to compute the XP-CLR statistic to infer natural selection☆94Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆87Updated 4 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- Useful bioinformatic scripts☆55Updated 4 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- Methods for examining PCA locally along the genome.☆77Updated 7 months ago
- feature-based deep learning for the identification of selective sweeps☆54Updated 2 weeks ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆79Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 11 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- A library for running k-mers based GWAS☆107Updated 5 months ago
- SMC++ infers population history from whole-genome sequence data.☆163Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆64Updated 11 months ago
- Estimate recombination rates from population genetic data☆65Updated 4 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- Demographic analysis of Brassica oleracea☆10Updated 4 months ago
- Scripts for analysis used during the course☆88Updated 11 months ago
- A pipeline that accepts a VCF file to run through Admixture☆59Updated 3 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆50Updated this week