ramachandran-lab / pongLinks
Fast analysis and visualization of latent clusters in population genetic data
☆78Updated 3 years ago
Alternatives and similar repositories for pong
Users that are interested in pong are comparing it to the libraries listed below
Sorting:
- Haplotype based scans for selection☆137Updated this week
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆102Updated 4 months ago
- ☆98Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Presentations from the course☆38Updated 2 years ago
- NLR-Annotator upload☆76Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 9 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆42Updated 2 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆108Updated last month
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- ☆31Updated 3 months ago
- SMC++ infers population history from whole-genome sequence data.☆170Updated last year
- Scripts for analysis used during the course☆93Updated last year
- A library for running k-mers based GWAS☆124Updated last year
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆85Updated 2 months ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 9 years ago