Probabilistic Inference of Molecular Evolution
☆10Sep 6, 2021Updated 4 years ago
Alternatives and similar repositories for jprime
Users that are interested in jprime are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- DarkHorse2 source code☆10May 3, 2022Updated 4 years ago
- k8s controller for SR Linux nodes scheduled by KNE☆18Jan 27, 2026Updated 3 months ago
- Taxa Insertion by Parsimony☆15Jan 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Bio++ Phylogenetic Library☆18Apr 4, 2026Updated last month
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 2 years ago
- A program to download large amounts of sequences from NCBI databases.☆21Feb 13, 2025Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 2 weeks ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 2 months ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Bio++ Core Library☆12Feb 9, 2026Updated 2 months ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- Benchmarking scripts for Gaia☆15Apr 10, 2025Updated last year
- ☆14Oct 27, 2025Updated 6 months ago
- Code for reproducing the paper "Space-Time Continuous PDE Forecasting using Equivariant Neural Fields" (https://arxiv.org/abs/2406.06660)…☆14Nov 18, 2025Updated 5 months ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Scripts to generate simulations and plots used in blog posts on genetic and genealogical ancestry gcbias.org/category/genetic-genealogy/ …☆17Dec 2, 2013Updated 12 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 months ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆13May 25, 2023Updated 2 years ago
- ☆15Jun 22, 2022Updated 3 years ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated last year
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Mar 4, 2022Updated 4 years ago
- Portable solution to generate genome alignment chains using lastz☆64Apr 6, 2026Updated last month
- Knowledge Independent Network Construction☆12Dec 23, 2025Updated 4 months ago
- GREAT algorithm in Python☆15Oct 24, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the ge…☆13Jul 8, 2021Updated 4 years ago
- An OpenConfig reference device implementation☆44Apr 30, 2026Updated last week
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 4 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Oct 11, 2022Updated 3 years ago