Alternatives and similar repositories for TRF2GFF

Users that are interested in TRF2GFF are comparing it to the libraries listed below

• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 4 years ago
• tangerzhang / calc_switchErr
  ☆31Updated 9 months ago
• lardo / khaper
  ☆29Updated 3 years ago
• baozg / phased-assembly-check
  ☆32Updated last year
• yiliao1022 / SVGAP
  A pipeline for genomic variant detection with genome assemblies at population scale
  ☆34Updated 7 months ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆33Updated 2 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆13Updated 6 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆21Updated 2 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated 2 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• i10labtitech / GINGER
  ☆29Updated last week
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆26Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 3 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated 2 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆42Updated 2 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆23Updated 3 weeks ago
• yilinZhang-bio / Watermelon-pangenome
  ☆27Updated 2 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆24Updated 5 years ago
• mrvollger / NucFreq
  ☆38Updated 3 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 7 years ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆14Updated 5 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 5 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 6 years ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 3 months ago
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆28Updated 4 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated last year