mdkarcher / phylodyn
☆16Updated 3 years ago
Alternatives and similar repositories for phylodyn:
Users that are interested in phylodyn are comparing it to the libraries listed below
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- An R-wrapper for lsd2☆9Updated last year
- ☆17Updated this week
- ☆9Updated 2 years ago
- ☆19Updated 10 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 weeks ago
- ☆11Updated 2 months ago
- babette is an R package to work with BEAST2☆45Updated this week
- R We There Yet?☆30Updated 3 weeks ago
- R package to run BEAST2☆11Updated this week
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 2 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago
- initial commit☆26Updated 2 years ago
- Phylogenetic inference using Stan☆24Updated last month
- ☆11Updated last year
- ☆26Updated last year
- An R package to help in plotting PCA results nicely.☆13Updated 5 years ago
- Process MS results in R, in a tidy way☆17Updated 6 years ago
- ☆10Updated last month
- starmie: plotting and inference for population structure models☆12Updated 6 years ago
- R package to estimate kinship and FST from SNP data☆20Updated 6 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- A suite of methods and models for studying evolutionary radiations☆23Updated 2 years ago
- Crash Course on Approximate Bayesian Computation in Population Genetics☆11Updated 2 years ago
- A smorgasbord of R functions for population genomic analyses☆18Updated 3 weeks ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 9 months ago
- ☆33Updated 5 months ago