mdkarcher / phylodyn
☆17Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for phylodyn
- An R-wrapper for lsd2☆9Updated last year
- ☆17Updated 5 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated 7 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- ☆19Updated 4 months ago
- ☆9Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 4 months ago
- ☆11Updated last year
- ☆10Updated 6 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 6 months ago
- R We There Yet?☆30Updated 2 years ago
- R package to run BEAST2☆10Updated last week
- Coalescent simulation and likelihood for phylodynamic inference☆13Updated 3 weeks ago
- initial commit☆25Updated last year
- Implementation of the treeSeg algorithm as an R package.☆14Updated 2 years ago
- R package to estimate kinship and FST from SNP data☆19Updated last month
- Process MS results in R, in a tidy way☆17Updated 6 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆26Updated 7 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 4 months ago
- An R package to help in plotting PCA results nicely.☆13Updated 4 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 5 years ago
- ☆19Updated last year
- Phylodynamic inference☆18Updated 4 years ago
- babette is an R package to work with BEAST2☆44Updated 4 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆14Updated 5 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- Effective Computing—Resources for Computational Biologists☆24Updated 4 years ago