☆20Nov 18, 2021Updated 4 years ago
Alternatives and similar repositories for phylodyn
Users that are interested in phylodyn are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 9 months ago
- ☆12May 12, 2019Updated 6 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- ☆18Oct 3, 2025Updated 5 months ago
- ☆22Dec 9, 2025Updated 2 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Nov 21, 2025Updated 3 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- ☆11Feb 9, 2025Updated last year
- ☆15Jun 6, 2023Updated 2 years ago
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated last month
- R We There Yet?☆32Mar 27, 2025Updated 11 months ago
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- Tutorial on Bayesian phylogenetic analysis☆52Sep 21, 2017Updated 8 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- ☆31Feb 24, 2026Updated last week
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 10 months ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 2 months ago
- ☆15Mar 20, 2023Updated 2 years ago
- Exploring tree diversity☆14Mar 13, 2017Updated 8 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- ☆17Jul 7, 2025Updated 7 months ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- ☆13Oct 30, 2024Updated last year
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- General purpose population genetics software☆15Jul 15, 2019Updated 6 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Variant call verification☆16May 12, 2025Updated 9 months ago
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 7 years ago