pomo-dev / PoMoLinks
Implementation of a polymorphism aware phylogenetic model using HYPHY
☆19Updated 3 years ago
Alternatives and similar repositories for PoMo
Users that are interested in PoMo are comparing it to the libraries listed below
Sorting:
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- ☆33Updated 4 years ago
- ☆24Updated 8 years ago
- Estimate recombination rates from population genetic data☆68Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- Infer demographic history with the Moran model☆48Updated 4 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 8 months ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- ☆29Updated last year
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 6 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago