pomo-dev / PoMoLinks
Implementation of a polymorphism aware phylogenetic model using HYPHY
☆19Updated 3 years ago
Alternatives and similar repositories for PoMo
Users that are interested in PoMo are comparing it to the libraries listed below
Sorting:
- Tools and Utilities for msmc and msmc2☆49Updated 3 months ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 5 years ago
- ☆33Updated 4 years ago
- ☆24Updated 8 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 6 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Infer demographic history with the Moran model☆49Updated 5 months ago
- A program for the Maximum-likelihood analysis of population genomic data.☆31Updated 4 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 8 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆55Updated 4 months ago
- Tools to convert to and from vcf format☆14Updated 8 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated 2 years ago
- ☆26Updated 9 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆45Updated 8 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Analyze and simulate Pool-Seq time series data☆16Updated 3 years ago