Alternatives and similar repositories for PoMo:

Users that are interested in PoMo are comparing it to the libraries listed below

• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆46Updated last year
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆32Updated 4 years ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 4 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆27Updated 3 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• jessicawleigh / popart
  General purpose population genetics software
  ☆12Updated 5 years ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• johnssproul / RepeatProfiler
  ☆24Updated this week
• ballesterus / Utensils
  Simple scripts for concatenate alignments and rename terminals for phylogenetics
  ☆21Updated 2 years ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆40Updated 2 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆30Updated 4 years ago
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆15Updated 7 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• lstevison / vcf-conversion-tools
  Tools to convert to and from vcf format
  ☆14Updated 7 years ago
• laurentnoe / yass
  genomic alignment similarity search tool
  ☆19Updated 7 months ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated 3 months ago