Implementation of a polymorphism aware phylogenetic model using HYPHY
☆19Jan 14, 2022Updated 4 years ago
Alternatives and similar repositories for PoMo
Users that are interested in PoMo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated last month
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 3 years ago
- ☆16Jul 9, 2026Updated last week
- A set of tools for modelling ancestry patterns along the genome.☆24Updated this week
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Mar 18, 2025Updated last year
- ☆12Sep 11, 2025Updated 10 months ago
- ☆15Mar 20, 2023Updated 3 years ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 3 years ago
- Pipeline to take VCF through to Selection Analysis.☆59Dec 11, 2022Updated 3 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- Covid19 microsimulation☆14May 6, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- phylogenetics tools for linux (and other mostly posix compliant) computers☆126Apr 18, 2026Updated 3 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- ☆11Apr 3, 2023Updated 3 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- A toolkit for automated local phylogenomic analyses, or ALPHA☆12Oct 23, 2019Updated 6 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆10Jun 21, 2022Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆34May 15, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆19Oct 6, 2025Updated 9 months ago
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆21Dec 4, 2024Updated last year
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- General purpose population genetics software☆18Jul 15, 2019Updated 7 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆63Apr 5, 2018Updated 8 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast, accurate species tree estimation.☆13Aug 29, 2024Updated last year
- Fragmentase Artifact Detection and Elimination☆13Mar 22, 2022Updated 4 years ago
- A transformer model to predict pathogenic mutations☆12Jun 25, 2025Updated last year
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 7 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated 2 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago