Alternatives and similar repositories for PoMo

Users that are interested in PoMo are comparing it to the libraries listed below

• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆62Updated 7 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 5 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆53Updated 7 years ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• sansubs / vcf2pop
  ☆29Updated last year
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆28Updated 6 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆43Updated 3 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆48Updated this week
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 8 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 7 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆51Updated 7 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆49Updated 5 months ago
• ballesterus / Utensils
  Simple scripts for concatenate alignments and rename terminals for phylogenetics
  ☆22Updated 3 years ago
• stschiff / msmc2
  ☆65Updated 3 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆46Updated 11 months ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 5 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 11 months ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 7 months ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated last year
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆47Updated 3 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated last year
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆30Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 4 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated 2 years ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆71Updated 5 years ago