talkowski-lab / svtkLinks
☆35Updated 4 years ago
Alternatives and similar repositories for svtk
Users that are interested in svtk are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variation detection in cohorts☆49Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- ☆51Updated 6 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Structural variant merging tool☆54Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Sample Contamination Estimate from VCF☆21Updated 10 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant caller☆55Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- ☆44Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆35Updated last month
- A variant caller for the GBA gene using WGS data☆22Updated last year
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆44Updated 3 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated last month
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last month
- Population-wide Deletion Calling☆35Updated 5 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ☆23Updated 9 months ago
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago