Phylogenetic maximum representation sampling: choosing most representative strains or taxa
☆46Jul 2, 2026Updated 3 months ago
Alternatives and similar repositories for parnas
Users that are interested in parnas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated last year
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- ☆30Mar 6, 2025Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Pipeline for creating comprehensive viral reference sets.☆12Sep 17, 2026Updated last month
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆58Mar 23, 2026Updated 7 months ago
- ☆10Apr 16, 2025Updated last year
- ☆39Oct 22, 2026Updated last week
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆56Oct 20, 2026Updated last week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆59Updated this week
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 4 months ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- A bioinformatics software focused on quality control based on species criteria☆15Aug 28, 2026Updated 2 months ago
- Viral (meta)-genome assembly pipeline.☆24Sep 8, 2026Updated last month
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- A tool for exploring large trees in the browser☆134Oct 7, 2026Updated 3 weeks ago
- ☆13May 29, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated 3 weeks ago
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 4 months ago
- Influenza data pipeline to automate genotyping assignment☆45Sep 10, 2026Updated last month
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 11 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 4 months ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Updated this week
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆51Oct 23, 2026Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Oct 20, 2026Updated last week
- Reference-based consensus creation☆61Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated 3 weeks ago
- Variant call verification☆19May 12, 2025Updated last year
- snipit: summarise snps relative to your reference sequence☆179Jan 13, 2026Updated 9 months ago
- Snakemake workflow management system and CLI generation tool☆67Oct 22, 2025Updated last year