HELIANO is a software for detection and classification of Helitron-like elements.
☆33Jun 10, 2025Updated last year
Alternatives and similar repositories for heliano
Users that are interested in heliano are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11May 7, 2026Updated last month
- ☆22Jan 13, 2026Updated 5 months ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 8, 2026Updated last week
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆114May 19, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 6 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- MCHelper: An automatic tool to curate transposable element libraries☆48May 6, 2026Updated last month
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- ☆42May 19, 2025Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- ☆32Mar 3, 2026Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆151May 14, 2026Updated last month
- Neural network classification of TE☆100Apr 3, 2026Updated 2 months ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆23Sep 1, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Mar 7, 2025Updated last year
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- ☆18Jul 15, 2021Updated 4 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated 2 weeks ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 10 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆262Updated this week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆271Jan 5, 2026Updated 5 months ago
- ☆41Jun 8, 2023Updated 3 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year