R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
☆30Sep 27, 2019Updated 6 years ago
Alternatives and similar repositories for badMIXTURE
Users that are interested in badMIXTURE are comparing it to the libraries listed below
Sorting:
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- A package for population structure inference from RAD-seq data☆34May 14, 2021Updated 4 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- Population genetics analyses from NGS data☆27Mar 8, 2021Updated 4 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆11Aug 15, 2024Updated last year
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆26Feb 16, 2018Updated 8 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Oct 12, 2023Updated 2 years ago
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Nov 15, 2023Updated 2 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 10 months ago
- ☆13Aug 18, 2023Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 11 months ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 2 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 3 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- ☆17Dec 2, 2015Updated 10 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated 5 months ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆28Dec 5, 2024Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆203Aug 15, 2024Updated last year
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 8 months ago
- GONE: Scripts, programs and an example data set☆51Jul 20, 2025Updated 7 months ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆72Sep 10, 2025Updated 5 months ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month