Alternatives and similar repositories for badMIXTURE

Users that are interested in badMIXTURE are comparing it to the libraries listed below

• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆43Updated 6 years ago
• ANGSD / NgsRelate
  ☆45Updated 9 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆52Updated 7 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆50Updated 6 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 3 years ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 7 months ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 5 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆49Updated 4 months ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆56Updated 6 months ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆35Updated 5 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆26Updated 10 months ago
• GenisGE / evalAdmix
  ☆15Updated last year
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last year
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 10 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated 4 months ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆16Updated last year
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆31Updated this week
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆22Updated 3 weeks ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆12Updated 7 months ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆19Updated 5 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago