danjlawson / badMIXTURELinks
R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
☆27Updated 6 years ago
Alternatives and similar repositories for badMIXTURE
Users that are interested in badMIXTURE are comparing it to the libraries listed below
Sorting:
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- ☆44Updated 7 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 2 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- ☆15Updated last year
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 5 years ago
- Genetic maps in autopolyploids☆31Updated 5 months ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆54Updated 4 months ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- ☆15Updated 5 years ago
- ☆13Updated 4 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Infer demographic history with the Moran model☆48Updated 4 months ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆14Updated 4 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 8 months ago
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- ☆17Updated 9 years ago
- R-package: Calculation of haplotype blocks and libraries☆33Updated 3 months ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago