R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
☆31Sep 27, 2019Updated 7 years ago
Alternatives and similar repositories for badMIXTURE
Users that are interested in badMIXTURE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population genetic summary statistics☆40Sep 28, 2023Updated 3 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆12Sep 15, 2026Updated last month
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆27Mar 8, 2026Updated 7 months ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆21Sep 25, 2026Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Aug 9, 2026Updated 2 months ago
- ☆13Jul 16, 2026Updated 3 months ago
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 8 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 13 years ago
- Tools and Utilities for msmc and msmc2☆51Jan 23, 2026Updated 9 months ago
- Population genetics analyses from NGS data☆28Mar 8, 2021Updated 5 years ago
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 10 months ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- Genetic Algorithm for Demographic Model Analysis☆60Feb 3, 2026Updated 9 months ago
- Short scripts for converting genetic data between formats.☆31Nov 11, 2022Updated 3 years ago
- Code and data for "Evaluating statistics for the identification of introgressed loci" by Simon H. Martin, John W. Davey and Chris D. Jigg…☆11Jan 23, 2018Updated 8 years ago
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- Estimating evolutionary coevality☆11Jul 16, 2026Updated 3 months ago
- faster haplotype-based admixture inference and dating software☆12Nov 25, 2025Updated 11 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- Haplotype based scans for selection☆151Jun 5, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Jul 5, 2026Updated 3 months ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Module for analysing admixture graphs☆30Apr 30, 2018Updated 8 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- A variational framework for inferring population structure from SNP genotype data.☆144Jan 6, 2023Updated 3 years ago
- ☆11Jan 14, 2019Updated 7 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 8 months ago
- Scalable population structure inference☆19Oct 22, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- method for modeling continuous and discrete population genetic structure☆39Aug 27, 2026Updated 2 months ago
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆26Jul 15, 2026Updated 3 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆212Jul 16, 2026Updated 3 months ago
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆45Nov 13, 2019Updated 6 years ago