inab / trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
☆194Updated this week
Alternatives and similar repositories for trimal:
Users that are interested in trimal are comparing it to the libraries listed below
- Pipeline for metabolic annotation of microbial genomes☆142Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆333Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆296Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆150Updated 3 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆202Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆212Updated 2 years ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆140Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆210Updated last month
- Bacterial ribosomal RNA predictor☆234Updated last year
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆157Updated 2 weeks ago
- Download files from NCBI Entrez by accession☆119Updated 5 months ago
- ☆198Updated 3 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆137Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- A tool to circularize genome assemblies☆236Updated 10 months ago
- fast phage annotation program☆155Updated last month
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Synteny and Rearrangement Identifier☆362Updated 2 months ago
- An updated pipeline for pangenome investigation☆282Updated this week
- BSR-Based Allele Calling Algorithm☆140Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆197Updated this week
- geNomad: Identification of mobile genetic elements☆212Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆242Updated 3 months ago
- Any Way to Show Multi genomic Synteny☆173Updated 4 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆113Updated last month
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 3 years ago
- Pan-genome wide association studies☆183Updated 8 months ago
- Convert various sequence formats to FASTA☆127Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆237Updated 2 months ago