inab / trimalLinks
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
☆231Updated this week
Alternatives and similar repositories for trimal
Users that are interested in trimal are comparing it to the libraries listed below
Sorting:
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆174Updated last month
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆172Updated 3 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 6 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated last month
- geNomad: Identification of mobile genetic elements☆266Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆271Updated 11 months ago
- Build a partitioned pangenome graph from microbial genomes☆284Updated last week
- Bacterial ribosomal RNA predictor☆259Updated 2 years ago
- A tool to circularize genome assemblies☆248Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆258Updated 2 weeks ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆198Updated 2 months ago
- Pan-genome wide association studies☆204Updated last year
- Rapid comparison and dereplication of genomes☆313Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆298Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆310Updated 6 months ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 3 months ago
- Download files from NCBI Entrez by accession☆129Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆326Updated 6 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆234Updated 7 months ago
- A user-friendly workflow for phylogenomics☆221Updated last week
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆191Updated last week
- Processing pipeline for pan-genome visulization and exploration☆141Updated 2 years ago
- ☆218Updated this week
- Scan contig files against PubMLST typing schemes☆250Updated 3 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆207Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆222Updated last week
- snipit: summarise snps relative to your reference sequence☆162Updated last month