A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
☆262Jun 5, 2026Updated this week
Alternatives and similar repositories for trimal
Users that are interested in trimal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆348Mar 4, 2025Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆248Updated this week
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago
- haplotypic duplication identification tool☆288Oct 30, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast genome-wide functional annotation through orthology assignment☆739May 22, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 3 weeks ago
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆282Apr 20, 2026Updated last month
- Phylogenetic orthology inference for comparative genomics☆857Jul 15, 2025Updated 10 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆197Jan 29, 2026Updated 4 months ago
- Genome-scale protein function classification☆383Updated this week
- RAxML Next Generation: faster, easier-to-use and more flexible☆466May 29, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De-Novo Repeat Discovery Tool☆240May 5, 2026Updated last month
- Microbial RNA annotation☆296Apr 12, 2026Updated last month
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆144Apr 6, 2025Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 10 months ago
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆173May 5, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆461Apr 12, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast genome analysis from unassembled short reads☆322Apr 8, 2024Updated 2 years ago
- Prodigal Gene Prediction Software☆542Jan 23, 2024Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆305Updated this week
- Automatically exported from code.google.com/p/cdhit☆730Oct 11, 2022Updated 3 years ago
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆90Mar 27, 2026Updated 2 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆254Apr 15, 2026Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆463Dec 16, 2025Updated 5 months ago
- Extensive de-novo TE Annotator☆448May 12, 2026Updated 3 weeks ago
- Accelerated BLAST compatible local sequence aligner.☆1,300Jun 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆382Feb 13, 2025Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- A program for detection of tRNA genes☆89Nov 16, 2022Updated 3 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216May 12, 2026Updated 3 weeks ago
- Efficient phylogenomic software by maximum likelihood☆210Nov 4, 2021Updated 4 years ago
- HyPhy: Hypothesis testing using Phylogenies☆264Jun 4, 2026Updated last week
- SPAdes Genome Assembler☆939Jun 3, 2026Updated last week