inab / trimalLinks
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
☆222Updated this week
Alternatives and similar repositories for trimal
Users that are interested in trimal are comparing it to the libraries listed below
Sorting:
- Bacterial ribosomal RNA predictor☆254Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆154Updated 3 months ago
- Download files from NCBI Entrez by accession☆127Updated last year
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆168Updated 2 weeks ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆168Updated 2 months ago
- A tool to circularize genome assemblies☆247Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆294Updated this week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆194Updated 3 weeks ago
- geNomad: Identification of mobile genetic elements☆258Updated last week
- Pan-genome wide association studies☆202Updated last year
- Processing pipeline for pan-genome visulization and exploration☆140Updated last year
- Application and Python module for average nucleotide identity analyses of microbes.☆214Updated 2 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆266Updated 9 months ago
- A user-friendly workflow for phylogenomics☆219Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆247Updated 2 months ago
- Similarity networks of biosynthetic gene clusters☆129Updated 3 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆278Updated last week
- Eukaryotic Genome Annotation Pipeline☆361Updated 2 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 6 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆303Updated 4 months ago
- Rapid comparison and dereplication of genomes☆310Updated 3 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆186Updated 2 weeks ago
- CAMISIM: Simulating metagenomes and microbial communities☆213Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆332Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆193Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆220Updated 2 months ago
- An updated pipeline for pangenome investigation☆311Updated 6 months ago
- Scan contig files against PubMLST typing schemes☆243Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆159Updated 2 months ago