tjunier / newick_utilsLinks
shell tools for processing phylogenetic trees
☆119Updated 3 years ago
Alternatives and similar repositories for newick_utils
Users that are interested in newick_utils are comparing it to the libraries listed below
Sorting:
- ☆77Updated 7 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆119Updated last year
- Recovering genes from targeted sequence capture data☆130Updated 2 weeks ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆75Updated last year
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Updated this week
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆92Updated this week
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 5 years ago
- Synteny Imager☆65Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 11 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated last month
- Foreign Contamination Screening caller scripts and documentation☆156Updated 10 months ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- Assembly statistic visualisation☆93Updated 2 years ago
- Interactive quality assessment of genome assemblies☆117Updated last month
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆123Updated 3 weeks ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆47Updated 5 years ago
- Calculate summary statistics and manipulate multiple sequence alignments☆91Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 4 months ago
- A toolbox for comparative genomics.☆108Updated 4 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 3 months ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 4 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- Best-fit model selection☆87Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆134Updated last year